RetrogeneDB ID: | retro_etel_394 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_6706:8384..9148(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000008582 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000001056 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.4 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MASSSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKEEIDIRLSRVQ |
MASSS.WLS.VNVVLVMAYGSLVF.LLFIFVKRQIMRFAMKS.RGPHVPVGHNAPKDLKEEID.RL.RVQ | |
Retrocopy | MASSSDWLSVVNVVLVMAYGSLVFLLLFIFVKRQIMRFAMKSWRGPHVPVGHNAPKDLKEEIDRRLFRVQ |
Parental | DIKYEPQLLADDDARLLQLETQGNQNCYNYLYRMKALDALRASEIPIHTKGRHPRSLMSRNFRSY-LLDL |
D.K.EPQLLA.DDARL.QLETQGNQNCYN.LY.MKALDA..ASEIP.HT.GRHPR.LM.RNF.S..LL.. | |
Retrocopy | DSK*EPQLLAVDDARLPQLETQGNQNCYNCLYKMKALDAIHASEIPFHTEGRHPRPLMGRNFHSH>LLNF |
Parental | RNATTP-FKG-VRKALIDTLLDGYETARYGTG-VFSQSEYLRYQEALTELATAVKARSGSSQRHHQSAAK |
.NATTP.F.G.V.....DTLL..YE.ARYGTG..F.QSEYLR.QEALTELAT.VKA.S.SSQRHHQSAAK | |
Retrocopy | QNATTP<FQGCVQGPHVDTLLHDYEAARYGTG>LFGQSEYLRSQEALTELATEVKA*SRSSQRHHQSAAK |
Parental | DLTQSP-EVSPTTIQVTYLPSNQKSKRAKHFLELKSFKDNYNTLESTL |
.LTQSP.EVSPTT..VTYLPS.QKSKRAKHFLELKSFKDNYNTLES.L | |
Retrocopy | YLTQSP>EVSPTTFEVTYLPSSQKSKRAKHFLELKSFKDNYNTLESPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011865 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009722 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019160 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005454 | 1 retrocopy | |
Equus caballus | ENSECAG00000017585 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000001056 | 15 retrocopies | |
Macropus eugenii | ENSMEUG00000002600 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000013338 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017237 | 3 retrocopies | |
Mus musculus | ENSMUSG00000027942 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000012008 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000007244 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000000785 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002717 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017758 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012915 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013866 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012777 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015824 | 1 retrocopy |