RetrogeneDB ID: | retro_etel_401 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_6787:77520..78108(-) | ||
Located in intron of: | ENSETEG00000002781 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIM2 | ||
Ensembl ID: | ENSETEG00000007968 | ||
Aliases: | None | ||
Description: | pim-2 oncogene [Source:HGNC Symbol;Acc:8987] |
Percent Identity: | 92.35 % |
Parental protein coverage: | 63.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLTKPQPELPAPPVAPTLPPGGKNQEAFEAEYRLGTVLGKGGFGTVFAGHRVADRLQVAIKVIPRNRVLG |
MLTKPQPELPAPPV.PTLPPGGKNQEAFEAE.RLGTVLGKGGFGTVFA.HRVADRLQVAIKVIPRNRVLG | |
Retrocopy | MLTKPQPELPAPPVPPTLPPGGKNQEAFEAECRLGTVLGKGGFGTVFAAHRVADRLQVAIKVIPRNRVLG |
Parental | SFPLDNSATCPLEVALLWKVGASGGHPGVIRLLDWFETLEGVMLVLERPSPAQDLFDYITEQGPLGESRS |
SFPL.NSATCPLEVAL.WKVGA.GGHPGVI.LLDWFETLEGVMLVLERPSPAQDL.D.ITE.GPLGESRS | |
Retrocopy | SFPLTNSATCPLEVALRWKVGAGGGHPGVICLLDWFETLEGVMLVLERPSPAQDLSDDITELGPLGESRS |
Parental | RCLFAQIVSAVRHCHACGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTD |
RCLFAQ.VSAVRHCHACGVVHRDIKDE.I.IDLRR.CAKLID.GSGALLHDEPYTD | |
Retrocopy | RCLFAQVVSAVRHCHACGVVHRDIKDETIPIDLRRRCAKLIDYGSGALLHDEPYTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000007968 | 1 retrocopy |
retro_etel_401 ,
|
Mus musculus | ENSMUSG00000031155 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000015757 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009613 | 1 retrocopy | |
Sorex araneus | ENSSARG00000008832 | 3 retrocopies |