RetrogeneDB ID: | retro_etel_402 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_6788:203210..203942(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000005656 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86. % |
Parental protein coverage: | 99.6 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | EAVAEKKKAAPAVP-ETLKKKRRNFA-ELKIKRLRKKFAQKMLRMARRKLIYEKAKHYHKEYRQMYRTEI |
EAVAEKK...PAVP.ETLKKK.RNF..ELK.KRLRKKFAQKML..ARRKLI.EKAKHYHKEYRQMYRT.I | |
Retrocopy | EAVAEKK--VPAVP<ETLKKKPRNFK<ELKLKRLRKKFAQKMLQKARRKLIFEKAKHYHKEYRQMYRTAI |
Parental | RMARMARKAGNFYVPGEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGAFVKLNKASINMLRIVEPY |
.MA.MARKAG.F.VPGEPKLAFVIRIRGINGVSP.VRKVLQLLRL.Q.FNG..VKLNKAS.NMLRIVEPY | |
Retrocopy | *MAWMARKAGSFCVPGEPKLAFVIRIRGINGVSPEVRKVLQLLRLPQVFNGTCVKLNKASMNMLRIVEPY |
Parental | IAWGY-PNLKSVNELIYKRGYGKINKKRIALTDNTLIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFL |
IAW.Y.PNLKSVNELIYKRG.GK..KKRIALTDNTLIARSLG.YGIICMED.IHEI.TVGK.FKEANNFL | |
Retrocopy | IAWRY<PNLKSVNELIYKRGDGKTIKKRIALTDNTLIARSLGQYGIICMEDRIHEI*TVGKCFKEANNFL |
Parental | WPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN |
WPFKLSSP.GGMKKK.THFVEGGDAGNREDQI.R.IRRMN | |
Retrocopy | WPFKLSSP*GGMKKKSTHFVEGGDAGNREDQIDRRIRRMN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |