RetrogeneDB ID: | retro_etel_404 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_6816:165328..165659(+) | ||
Located in intron of: | ENSETEG00000016689 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BLOC1S6 | ||
Ensembl ID: | ENSETEG00000007378 | ||
Aliases: | None | ||
Description: | biogenesis of lysosomal organelles complex-1, subunit 6, pallidin [Source:HGNC Symbol;Acc:8549] |
Percent Identity: | 68.14 % |
Parental protein coverage: | 65.12 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LPDLQRSKQALQELTQNQVVLLDTLEQEISKFKECHSMLDINALFTEAKHYHTKLVNIRKEMLMLHEKTS |
LPDLQRSKQ.LQELTQNQ.VL.DTLEQEISK.KECHS.LD.N.LFTEAKH.H.KLVN.RKEM.M.HE.TS | |
Retrocopy | LPDLQRSKQTLQELTQNQAVLWDTLEQEISKCKECHSLLDVNVLFTEAKHDHPKLVNVRKEMPMPHERTS |
Parental | KLKKR-ALKLQQKRQKEELDKEQQREKEFEREKQLTAKPAKRT |
KL.....L.........E.......EKE.EREKQLTAKPA.RT | |
Retrocopy | KLQST>KLQQKRQNEDLEKEQQR--EKEAEREKQLTAKPAQRT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012059 | 7 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019785 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000007378 | 1 retrocopy |
retro_etel_404 ,
|
Gorilla gorilla | ENSGGOG00000013892 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012636 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000005595 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017628 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000017351 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013706 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007310 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007038 | 1 retrocopy |