RetrogeneDB ID: | retro_etel_413 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_6876:561741..562089(-) | ||
Located in intron of: | ENSETEG00000001146 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB1A | ||
Ensembl ID: | ENSETEG00000002205 | ||
Aliases: | None | ||
Description: | RAB1A, member RAS oncogene family [Source:HGNC Symbol;Acc:9758] |
Percent Identity: | 58.62 % |
Parental protein coverage: | 56.93 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR |
K.L.IG.SGVGKS.LLLRF.DDT.......TIGVDFK..TI...G...KL.IWDTAGQERFRT.T.SYYR | |
Retrocopy | KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKLKTISGNGNKAKLAIWDTAGQERFRTLTPSYYR |
Parental | GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN-VNKLLVGNKCD |
GA.G.I.VYDVT....F.....WL.E...Y...N.....LVGNK.D | |
Retrocopy | GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000002205 | 2 retrocopies |
retro_etel_1687, retro_etel_413 ,
|
Echinops telfairi | ENSETEG00000010795 | 1 retrocopy | |
Homo sapiens | ENSG00000138069 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000021721 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017003 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012360 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011989 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004992 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000020693 | 1 retrocopy | |
Drosophila melanogaster | FBgn0016700 | 1 retrocopy |