RetrogeneDB ID: | retro_etel_421 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_7064:82683..83004(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZMAT5 | ||
Ensembl ID: | ENSETEG00000003789 | ||
Aliases: | None | ||
Description: | zinc finger, matrin-type 5 [Source:HGNC Symbol;Acc:28046] |
Percent Identity: | 86.92 % |
Parental protein coverage: | 62.94 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MGKRYFCDYCDRSFQDSLHNRKKHLNGLQHLKAKKVWYDTFRDAATILVDEQNKRPCWKFLLIGQCDFGS |
MG.RYFCDYC.RSFQDSL.NRKKHL.GLQHLKAKKVWYD.F..AATILVD.QNKRPCWKFLLIGQCDFGS | |
Retrocopy | MGRRYFCDYCNRSFQDSLYNRKKHLSGLQHLKAKKVWYDMF*EAATILVDKQNKRPCWKFLLIGQCDFGS |
Parental | KCRFSHLSGRDLQELSRQVEEERRAKEWPMDIGELPE |
.C.FSHLSGRDLQ.LSRQVEE.R.AKEWP.DIGELPE | |
Retrocopy | QCQFSHLSGRDLQKLSRQVEEKRWAKEWPLDIGELPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008059 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012343 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000020994 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000003789 | 2 retrocopies |
retro_etel_2098, retro_etel_421 ,
|
Felis catus | ENSFCAG00000004251 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017398 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013253 | 1 retrocopy |