RetrogeneDB ID: | retro_etel_426 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_709:142208..143292(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000014581 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000009184 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.26 % |
Parental protein coverage: | 70.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GRTVIIEQSWGSPK-VTKDGVTVAKSID-LKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKE |
GRTVIIEQSWGSPK.VTKDGVTVAK....LKDKY..I.AKLVQDVANNTNEEAGDGT..ATVLARSIAKE | |
Retrocopy | GRTVIIEQSWGSPK<VTKDGVTVAK*SN<LKDKYMTIWAKLVQDVANNTNEEAGDGTMAATVLARSIAKE |
Parental | GFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPDEIAQVATISANGDKEIGTIISDAMKKVGRK |
GFEKISKGANPVEIRRG.M.AVDAVIAE.KKQSKP.TTP.EIAQVATISANGDKEIGTIIS.AMKK.GRK | |
Retrocopy | GFEKISKGANPVEIRRGLMVAVDAVIAEFKKQSKPMTTPEEIAQVATISANGDKEIGTIISGAMKKIGRK |
Parental | GVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTAKGQKCEFQDAYVLLSEKKISSIQSIVPAQEIANA |
GVITVKDGKTLNDELEII.GMKFDRGYISPYFINTAKGQKCEFQDAYVLLSEKKISSIQSIVPA.EIANA | |
Retrocopy | GVITVKDGKTLNDELEIIDGMKFDRGYISPYFINTAKGQKCEFQDAYVLLSEKKISSIQSIVPALEIANA |
Parental | HRKPLVIXXXXXXXXXXXXXXXXXLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEEGLTLNLED |
H..PLVI.................LKVGLQ.VAVKAPGFGDNRKNQLKDMAI.TGGAVFGEEGLTLNLED | |
Retrocopy | HHNPLVIIAEDVDGEVLSTLVLNRLKVGLQIVAVKAPGFGDNRKNQLKDMAITTGGAVFGEEGLTLNLED |
Parental | VQPHDLGKVGEVIVTKDDAMLLKGKGDKAHIEKRIQEIIEQLDITTSEYEKEKLNERLAKLSDGVAVLKV |
.QPHDLGKVGEVIVTK.DAML.KGKG.KA.I.KR.QEIIEQLD.TTSEYEKEKLN.RLAKLSDGVAVLKV | |
Retrocopy | IQPHDLGKVGEVIVTKSDAMLVKGKGGKAQIGKRVQEIIEQLDVTTSEYEKEKLNKRLAKLSDGVAVLKV |
Parental | GGTSDVEVNEKKDR |
G.TSDVEVNEKKDR | |
Retrocopy | GETSDVEVNEKKDR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |