RetrogeneDB ID: | retro_etel_437 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_7151:100420..100697(+) | ||
Located in intron of: | ENSETEG00000005577 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDK2AP2 | ||
Ensembl ID: | ENSETEG00000006428 | ||
Aliases: | None | ||
Description: | cyclin-dependent kinase 2 associated protein 2 [Source:HGNC Symbol;Acc:30833] |
Percent Identity: | 67.35 % |
Parental protein coverage: | 75.4 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | PVPT-GSVPSPSGSGPGAAAPFRPLFNDFGPPSMGYVQAMKPPGTQGSQSTYTDLLSVIEE-MGKEIRP- |
PVPT.GS.PSPSG....AAAPF.PLFNDFG.P...YVQA.K.P.TQ.SQST...LLSV.E...GK.I.P. | |
Retrocopy | PVPTAGSIPSPSGCKQ*AAAPFWPLFNDFGLPFRVYVQAIKLPCTQSSQSTHRNLLSVVED<LGKVIGP< |
Parental | TYAGSKSAMERLKRGIIHARALVRECLA |
TYAGSKSAM...K.GIIHA.ALVR..LA | |
Retrocopy | TYAGSKSAM---KIGIIHAQALVRVYLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000011370 | 1 retrocopy | |
Equus caballus | ENSECAG00000020079 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000006428 | 3 retrocopies |
retro_etel_257, retro_etel_334, retro_etel_437 ,
|
Homo sapiens | ENSG00000167797 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000010159 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000011827 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006438 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008275 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003966 | 9 retrocopies | |
Tupaia belangeri | ENSTBEG00000005476 | 2 retrocopies |