RetrogeneDB ID: | retro_etel_442 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_7261:46202..46657(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPZA2 | ||
Ensembl ID: | ENSETEG00000019711 | ||
Aliases: | None | ||
Description: | capping protein (actin filament) muscle Z-line, alpha 2 [Source:HGNC Symbol;Acc:1490] |
Percent Identity: | 67.32 % |
Parental protein coverage: | 53.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VFNDVRLLLNNDNLLREGAAHAFAQYNLDQFTPVKIDGYEDQVLITEHGDLGNGKFLDPKNRICFKFDHL |
VF.DV.LLL.NDNLLREGAAHAFAQYN..Q.T..KI.GYED.V.ITEHGDLG...FLD..N.I.F..DHL | |
Retrocopy | VFGDVQLLLHNDNLLREGAAHAFAQYNMGQCTSRKIEGYEDEVFITEHGDLGSSRFLDLTNKISFRSDHL |
Parental | RKEATDPRPYEAENAAESWRTSVETALRAYVKEHYPNGVCTVYGKKIDGQQTIIACIE-SHQFQAKNFWN |
.KEA.DP.P........SWR.S...A.RAYVK.H...G..TV..K..DGQQ.IIACIE..HQFQ.KNFWN | |
Retrocopy | HKEAHDPQPEDIDGSLKSWRESCDHAPRAYVKNHNSKGFNTVRAKALDGQQMIIACIE<NHQFQPKNFWN |
Parental | GRWRSEWKFTITP |
GRWRSEWKFTITP | |
Retrocopy | GRWRSEWKFTITP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004925 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007677 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000005771 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016226 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009063 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000019711 | 3 retrocopies |
retro_etel_1516, retro_etel_2020, retro_etel_442 ,
|
Gorilla gorilla | ENSGGOG00000012158 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000707 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007910 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003591 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017933 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000026942 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000024828 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012657 | 2 retrocopies |