RetrogeneDB ID: | retro_etel_443 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_7287:141775..142246(+) | ||
Located in intron of: | ENSETEG00000016906 | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000016912 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000013586 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80. % |
Parental protein coverage: | 70.85 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | NVHCPKQEALSSELAAEM-DTVKSMVHRLFTAIHFDEYQRRKETHLLENIDHL-KKQLQPLEQLKARIEG |
..HCPKQEALSSE.AA...DTVKSMVHRLFTA.H.DEYQ.RKETHLLEN.DHL......P..QLKA...G | |
Retrocopy | HAHCPKQEALSSEHAAKR<DTVKSMVHRLFTAMHLDEYQQRKETHLLENNDHL>RSSCSP-KQLKAQTQG |
Parental | RSEARINKLLWCGLALLSAQGGALAWFTWWVYSWDIMEPVTYFLTFANTVVFFAYFVVTXXDYTYSAVSG |
RSEARI.KLLW.GLALLSAQGG.LAWFTWWVYSWDIMEPVTYF.TFAN..VFFAYFVVT..DYTYSAVSG | |
Retrocopy | RSEARISKLLWSGLALLSAQGGGLAWFTWWVYSWDIMEPVTYFITFANSMVFFAYFVVTQQDYTYSAVSG |
Parental | RQFLHFFYQRSKQEHFDVEQ |
RQFLH.FYQ.SKQEHFD.EQ | |
Retrocopy | RQFLHYFYQKSKQEHFDAEQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000013586 | 1 retrocopy |
retro_etel_443 ,
|
Loxodonta africana | ENSLAFG00000002726 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000017044 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000009837 | 1 retrocopy |