RetrogeneDB ID: | retro_etel_530 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_8833:471..1324(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000012165 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GDAP2 | ||
Ensembl ID: | ENSETEG00000004391 | ||
Aliases: | None | ||
Description: | ganglioside induced differentiation associated protein 2 [Source:HGNC Symbol;Acc:18010] |
Percent Identity: | 89.82 % |
Parental protein coverage: | 57.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ATYQRLLPLYFPRSLEEESQSLPYLPADIGNSEGEPVVPERQIRISEKPGAPEDDQEEEEGLGVDLSFIG |
ATYQRLLPLYFPRSLEEESQSLPYLPADIGNSE.EPVVPERQIRISEKPGAPEDDQEEEEGLGVDLSFIG | |
Retrocopy | ATYQRLLPLYFPRSLEEESQSLPYLPADIGNSEVEPVVPERQIRISEKPGAPEDDQEEEEGLGVDLSFIG |
Parental | SHAFARM-EGDIDKQRRLILQGQLSEAALQKQHQRNYNRWLCQARSEDLSDIASLKALYQTGVDNCGXXX |
SHAFA.M.EGDIDKQRRLILQGQLSEAALQKQHQRNYN.WLCQARSEDLS.IASLKALYQTGVDNCG... | |
Retrocopy | SHAFAQM>EGDIDKQRRLILQGQLSEAALQKQHQRNYNCWLCQARSEDLSHIASLKALYQTGVDNCGCTV |
Parental | XXXXXXXXXXXXXXXXXALLYFIHVMDHIAVKEYVLVYFHTLTSEYNHLDSDFLKKLYDVVDVKYKRNLK |
.................ALLYFIHV.DHIAVKEYVLVYFHTLTSEYNHLDSDFLKKLYDVVDVKYKRNLK | |
Retrocopy | MVVVGRNIPVTLIDMDKALLYFIHVTDHIAVKEYVLVYFHTLTSEYNHLDSDFLKKLYDVVDVKYKRNLK |
Parental | AVYFVHPTFRSKVSTWFFTTFSVSGLKDKVHHVDSLHQLFSAISPEQVDFPPFVLEYDARENGPYYTSDP |
AVYFVHPTFRSKVSTWFFTTFSVSGLKDK.HHVDSLHQLFSAISPEQ.DFPPFVLEYDARENGP.YTSDP | |
Retrocopy | AVYFVHPTFRSKVSTWFFTTFSVSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDARENGP*YTSDP |
Parental | PSPDF |
PSPDF | |
Retrocopy | PSPDF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012907 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000004391 | 1 retrocopy |
retro_etel_530 ,
|
Felis catus | ENSFCAG00000003468 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027865 | 1 retrocopy |