RetrogeneDB ID: | retro_etel_540 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_8917:34552..35034(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000018450 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TAF12 | ||
Ensembl ID: | ENSETEG00000012597 | ||
Aliases: | None | ||
Description: | TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa [Source:HGNC Symbol;Acc:11545] |
Percent Identity: | 77.91 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MNQFGPSALINLSNFSSIKPEPASTPPQG-SMANSTTVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVRE |
.....PSALIN.SNFSSIKPEPASTPP.G...A.S..VVKIPGTPGA...LSPENNQVL.KKKLQ.LVRE | |
Retrocopy | ITELDPSALINFSNFSSIKPEPASTPPPG>TLAYSMMVVKIPGTPGARWQLSPENNQVLPKKKLQGLVRE |
Parental | VDPNEQLDEDVEEMLLQIADDFIES-VVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRP |
VDPNEQLDEDVEEMLLQIA.DFIES.V..A.CQLARHRKSSTLEVKDVQLHLERQ..MWIPGFG.EE... | |
Retrocopy | VDPNEQLDEDVEEMLLQIASDFIES>VTAA-CQLARHRKSSTLEVKDVQLHLERQRTMWIPGFGFEETQL |
Parental | YKKACTTEAHKQRMALIRKTTKK |
YKKAC.TEA..QR.AL..KTT.K | |
Retrocopy | YKKACATEAYEQRTALLWKTTEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004366 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000009742 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000009044 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000015036 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012597 | 2 retrocopies |
retro_etel_129, retro_etel_540 ,
|
Macropus eugenii | ENSMEUG00000000914 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000012595 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000010943 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000015506 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000003935 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000001524 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048288 | 1 retrocopy | |
Sorex araneus | ENSSARG00000007568 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000005320 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005548 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000006779 | 1 retrocopy |