RetrogeneDB ID: | retro_etel_541 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_8917:84275..85018(-) | ||
Located in intron of: | ENSETEG00000018451 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS6 | ||
Ensembl ID: | ENSETEG00000001584 | ||
Aliases: | None | ||
Description: | ribosomal protein S6 [Source:HGNC Symbol;Acc:10429] |
Percent Identity: | 86.8 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MKLNISFPATGCQKLIEVDDERKLRTF-YEKRMATEVAAEALGDEWKGYVVRISGGNDKQGFPMKQGVLT |
MKL.ISFPATGCQKLIEVD.ERKLRTF.YEK.MATEVA.EALGDE.KGYVVRISGGNDKQGFPMK.GVLT | |
Retrocopy | MKLSISFPATGCQKLIEVDNERKLRTF<YEK*MATEVAPEALGDE*KGYVVRISGGNDKQGFPMKKGVLT |
Parental | HGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGLKRAS |
H.RVRLLLSKGHSC......GE.......GCIVDANLSVLNLVIVKKGEK.IPGLTDTTVP.RLG..R.S | |
Retrocopy | HRRVRLLLSKGHSC*TKENCGE-EAQICPGCIVDANLSVLNLVIVKKGEKEIPGLTDTTVPPRLGPQRGS |
Parental | RIRKLFNLSKEDDVRQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEY |
RIRKLFNLS.EDDVRQYVVRKPLNKEGKKPRTK.PKI.RLVTPRVLQHKR.RIALKKQ.TKKNKEEAAEY | |
Retrocopy | RIRKLFNLSEEDDVRQYVVRKPLNKEGKKPRTKVPKIRRLVTPRVLQHKR*RIALKKQHTKKNKEEAAEY |
Parental | AKLLAKRMKEAKEKRQEQIAKRRRLSSLRASTSKSESSQK |
A.LLAKRMKEAKEKRQEQIAKRRRLSSLRASTS.SESSQK | |
Retrocopy | AELLAKRMKEAKEKRQEQIAKRRRLSSLRASTSESESSQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |