RetrogeneDB ID: | retro_etel_591 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_100240:4041..4407(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LAPTM4A | ||
Ensembl ID: | ENSETEG00000002569 | ||
Aliases: | None | ||
Description: | lysosomal protein transmembrane 4 alpha [Source:HGNC Symbol;Acc:6924] |
Percent Identity: | 79.03 % |
Parental protein coverage: | 63.27 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IPFFCYRLFDFVLSCLVAISSLTYLPRIKEYLDQLPDFPYKDDLLALDSSCLLFIVLLFFVFFIIFKAYL |
.P.F...L..F....L.....LTYLPR.KE.LDQLPDFPYKDD.LALDSSCLLFI.LLFFVFFIIFKAYL | |
Retrocopy | VPDFQVPLTSFSVARLLSV--LTYLPRFKEHLDQLPDFPYKDDSLALDSSCLLFIILLFFVFFIIFKAYL |
Parental | INCVWNCYKFINNRNLPEIAVYPAFEAPPQYVLPTYEMAVKMPEKEPPPPYIPA |
IN.VWNC.KFINNRNLPE.AVYPAFEAPPQ.VLPTYEMAVK.PEKEP.PPYIPA | |
Retrocopy | INRVWNCFKFINNRNLPETAVYPAFEAPPQHVLPTYEMAVKVPEKEPLPPYIPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020894 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011200 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000007433 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002569 | 1 retrocopy |
retro_etel_591 ,
|
Mustela putorius furo | ENSMPUG00000013714 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000012401 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002909 | 3 retrocopies |