RetrogeneDB ID: | retro_etel_607 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_102353:2..1109(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCT7 | ||
Ensembl ID: | ENSETEG00000009409 | ||
Aliases: | None | ||
Description: | chaperonin containing TCP1, subunit 7 (eta) [Source:HGNC Symbol;Acc:1622] |
Percent Identity: | 97.56 % |
Parental protein coverage: | 68.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPTPVILLKEGTDSSQGISQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDV |
MPTPVILLKEGTDSSQGI.QLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLL.V | |
Retrocopy | MPTPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLNV |
Parental | VHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVSKIKEIAV |
VHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVSKIKEIAV | |
Retrocopy | VHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVSKIKEIAV |
Parental | TVKREDKVEQRKLLEKCAKTALSSKLISQQKAFFAKMVVDAVMMLDDLLQLKMIGIKKVQGGALEESQLV |
TVKREDKVEQRKLLEKCAKTALSSKLISQQKAFFAKMVV.AVMMLDDLLQLKMIGIKKVQG.ALEESQLV | |
Retrocopy | TVKREDKVEQRKLLEKCAKTALSSKLISQQKAFFAKMVVVAVMMLDDLLQLKMIGIKKVQGRALEESQLV |
Parental | AGVAFKKTFSYAGFEMQPKKYSNPKIALLNVELELKAEKDNAEVRVHTVEDYQAIVDAEWDILYDKLEKI |
AGVAFKKTFSYAGFEMQPKKYSNPKIALLNVELELKAEKDNAEVRVHTVEDYQAIVDAEW.ILYDKLEKI | |
Retrocopy | AGVAFKKTFSYAGFEMQPKKYSNPKIALLNVELELKAEKDNAEVRVHTVEDYQAIVDAEWNILYDKLEKI |
Parental | HRSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLKRTMM-CGGSIQTSVNALSAEVLGSCQGFEET |
HRSGAKVVLSKLPIGDV.TQYFADRDMFCAGRVPEEDLKRTMM.CGGSIQTSVNALSAEVLGSCQ.FEET | |
Retrocopy | HRSGAKVVLSKLPIGDVTTQYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSAEVLGSCQVFEET |
Parental | QIGSERYNFFTGCPKAKTC |
QIG.ERYNFFTGCPKAKTC | |
Retrocopy | QIGGERYNFFTGCPKAKTC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000008879 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007937 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000009409 | 2 retrocopies |
retro_etel_1478, retro_etel_607 ,
|
Gorilla gorilla | ENSGGOG00000007766 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000416 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012448 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009162 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000002066 | 2 retrocopies |