RetrogeneDB ID: | retro_etel_62 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_1061:166046..166358(-) | ||
Located in intron of: | ENSETEG00000003407 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL11 | ||
Ensembl ID: | ENSETEG00000014825 | ||
Aliases: | None | ||
Description: | ribosomal protein L11 [Source:HGNC Symbol;Acc:10301] |
Percent Identity: | 89.42 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSI |
RY.VRSFGIRRNEK.AVHCTVRGA.AEEILEKGLKV.EYELR.N.FSDTGNFGFGIQEHIDLGIKYDPSI | |
Retrocopy | RYAVRSFGIRRNEKTAVHCTVRGARAEEILEKGLKVWEYELRNNTFSDTGNFGFGIQEHIDLGIKYDPSI |
Parental | GIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRI |
.IYGLDFYVVLGRPG.SIADKKRRTGCIG..HR. | |
Retrocopy | CIYGLDFYVVLGRPGVSIADKKRRTGCIGSEHRV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000013232 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011230 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000012496 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000014825 | 8 retrocopies |
retro_etel_1054, retro_etel_136, retro_etel_1452, retro_etel_1893, retro_etel_2018, retro_etel_500, retro_etel_62 , retro_etel_948,
|
Gorilla gorilla | ENSGGOG00000014628 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000013738 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000002445 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000012828 | 1 retrocopy | |
Mus musculus | ENSMUSG00000059291 | 3 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000000321 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026260 | 9 retrocopies |