RetrogeneDB ID: | retro_etel_63 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_1074:90906..91297(-) | ||
Located in intron of: | ENSETEG00000008754 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | IAH1 | ||
Ensembl ID: | ENSETEG00000003899 | ||
Aliases: | None | ||
Description: | isoamyl acetate-hydrolyzing esterase 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:27696] |
Percent Identity: | 86.47 % |
Parental protein coverage: | 75.29 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GYNTRWAKIILPRIIGNGSGLDRPVAVTIFFGANDSALKDENPKQHI-PLEEYLDNLKSMVQYLKSVDIP |
GYNTRWAKIILPRIIG.GS.LDRPVAVT.FFGANDSALKDENPKQHI.PLEEYLDN.KSMVQYLKSV.IP | |
Retrocopy | GYNTRWAKIILPRIIGKGSSLDRPVAVTVFFGANDSALKDENPKQHI<PLEEYLDNFKSMVQYLKSVEIP |
Parental | EKRVILITPPPLCETA-WEKECILQGCKLNRLNLVTGEYAKACLQAARDCGTGVLDLWTLMQD |
E..V.LITPPPLCETA.WEKECILQGCKLNRLNLVTGEYAKA.LQ.A..C.T..LDLWTLMQ. | |
Retrocopy | EN*VTLITPPPLCETA<WEKECILQGCKLNRLNLVTGEYAKARLQVAQACRTDALDLWTLMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000003840 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000003899 | 2 retrocopies |
retro_etel_629, retro_etel_63 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000004500 | 1 retrocopy |