RetrogeneDB ID: | retro_etel_633 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_10834:2975..3632(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000018599 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000012655 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.61 % |
Parental protein coverage: | 60.54 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | MSHPVP-QTKPSNPSNPRVFFDVDIGGEQVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHLK |
MSHP.P.QTKPS.PSN..V.FDVDI..EQVGRI.LE.FA..VPKTAENFR.LC.G.KG..P..GKPLH.K | |
Retrocopy | MSHPSP>QTKPSSPSNSLVLFDVDIREEQVGRIILESFANTVPKTAENFRVLCVGGKGFEPIAGKPLHFK |
Parental | G-CPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFYYKHDQEGLLSMANAGP-NTNGSQFFITTV |
..CPF...I..FMIQGGDF.NQ.GTGGESIYGE.FEDENFYYK..QEGLL.MANAGP.NTNGSQFFITT. | |
Retrocopy | E*CPFRGTITRFMIQGGDF*NQKGTGGESIYGENFEDENFYYK--QEGLLTMANAGP<NTNGSQFFITTL |
Parental | PTPHLDGKHVVFGQVIKGMGVARMLENIEVEGE-KPAKLCIIAECGELKEGDDWGIFPK-DGSGDSYPDF |
...HLDGK.VVFGQVIKG.GVAR.LEN.EVEGE.KPA..C..AECGEL.E..DWGI.PK..GSGDS.PDF | |
Retrocopy | ---HLDGKCVVFGQVIKGLGVARLLENKEVEGE<KPATCCAVAECGELNEEGDWGIVPK<NGSGDSHPDF |
Parental | PEDAEIDFKDVDK-ILLITE |
P..AEID.K.V.K..LL.T. | |
Retrocopy | PVSAEIDLKGVVK<VLLVTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000016680 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000012069 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001437 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000001046 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000012655 | 2 retrocopies |
retro_etel_10, retro_etel_633 ,
|
Felis catus | ENSFCAG00000028926 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000009317 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017768 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000018108 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027804 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006602 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003317 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000015159 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000027408 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000001552 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016269 | 1 retrocopy |