RetrogeneDB ID: | retro_etel_638 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_119507:673..1256(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000009014 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN3 | ||
Ensembl ID: | ENSETEG00000010095 | ||
Aliases: | None | ||
Description: | calponin 3, acidic [Source:HGNC Symbol;Acc:2157] |
Percent Identity: | 93.85 % |
Parental protein coverage: | 62.58 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KTKGFHTTIDIGVKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKMQTDKPF |
KTKGFHTTIDIG.KYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPK.QTDKPF | |
Retrocopy | KTKGFHTTIDIGAKYAEKQTRRFDEGKLKAGQSVIGLQMGTNKCASQAGMTAYGTRRHLYDPKIQTDKPF |
Parental | DQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDNSTISLQMGTNKVASQKGMSVYGLGRQVYD |
DQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN.TISLQMGTN.VASQKGMSVYGLG.QVYD | |
Retrocopy | DQTTISLQMGTNKGASQAGMLAPGTRRDIYDQKLTLQPVDN*TISLQMGTNRVASQKGMSVYGLGWQVYD |
Parental | PKYCAAPTEPVLHNGSQGTGTNGSEISDSDYQAEYPDECHGEYPDDYP-REYQYG |
PKYCAAPTEPV.HN.SQGTG.NG.EISDSDYQAEYPDE.HGEYPDDY..REYQYG | |
Retrocopy | PKYCAAPTEPVIHNSSQGTGMNGLEISDSDYQAEYPDEYHGEYPDDYS>REYQYG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016707 | 1 retrocopy | |
Bos taurus | ENSBTAG00000020345 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018128 | 3 retrocopies | |
Equus caballus | ENSECAG00000020188 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010095 | 1 retrocopy |
retro_etel_638 ,
|
Homo sapiens | ENSG00000117519 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013870 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002921 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000001690 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000004326 | 1 retrocopy | |
Mus musculus | ENSMUSG00000053931 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011207 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000000979 | 15 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002670 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010749 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004889 | 2 retrocopies |