RetrogeneDB ID: | retro_etel_640 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_12132:790..1571(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RRM2 | ||
Ensembl ID: | ENSETEG00000015797 | ||
Aliases: | None | ||
Description: | ribonucleotide reductase M2 [Source:HGNC Symbol;Acc:10452] |
Percent Identity: | 66.29 % |
Parental protein coverage: | 84.14 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | FCR-VRGSSPAVRSLPACS-RRTMLSVRVPLATIDPQQVQLSPLKALSLADKENTPPSLSSARVLASKAA |
FCR.VRG.S......P.....RTMLSV...L.TIDPQQVQL.P.KALSL.DKENTP.SLSSARVLA..AA | |
Retrocopy | FCR>VRGLSAICPRFPPAP>SRTMLSVPLRLTTIDPQQVQLWPMKALSLGDKENTPLSLSSARVLANQAA |
Parental | RKIFQEP-SPRAPASSVEDEPLLKENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALK |
RKIFQEP.SP.APASS.ED.P.....P.....FP...........K....F.....VDLSKDIQHWEAL. | |
Retrocopy | RKIFQEPESPKAPASSMEDSPC*RRTPAALSSFPSSTMAFGRCIRKLRPPFGRPR-VDLSKDIQHWEALQ |
Parental | PEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDSKER |
PEER.FISH.LAFFAASDGIV.ENLVERFSQ..QITEAR.FYGFQIAM.NIHSEMYSLLIDT.I.DSKER | |
Retrocopy | PEERDFISHALAFFAASDGIVHENLVERFSQDIQITEAR*FYGFQIAMDNIHSEMYSLLIDTGIEDSKER |
Parental | EYLFNAIETMPCVKKKADW-ALRWIGDKEATYGERVVAFAAVEGIFFSGSFASI |
.YL.NAIE.MPC.KK..DW....WIG...A..GE.VV.FAA..GIFFSG.F..I | |
Retrocopy | GYLGNAIEIMPCMKKETDW<GFQWIGHNKAACGEYVVVFAAGGGIFFSG*FFCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003409 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000006533 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000008652 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000009755 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015797 | 2 retrocopies |
retro_etel_640 , retro_etel_691,
|
Echinops telfairi | ENSETEG00000020338 | 1 retrocopy | |
Homo sapiens | ENSG00000171848 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000000121 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000012789 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010596 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002057 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000014763 | 1 retrocopy | |
Mus musculus | ENSMUSG00000020649 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000013733 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000007075 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012656 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000023272 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000021742 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000017209 | 1 retrocopy |