RetrogeneDB ID: | retro_etel_651 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_130435:342..1060(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000013094 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000001056 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.55 % |
Parental protein coverage: | 93.68 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MASSSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKEEIDIRLSRVQ |
MASSS.WLS.VNV.LVMAY.SLVFVLLFIFVKR.IM.FAMKS.RGPHVPVGHNAP.DLKEEID.RL.RVQ | |
Retrocopy | MASSSDWLSMVNVMLVMAYWSLVFVLLFIFVKREIMCFAMKSWRGPHVPVGHNAPMDLKEEIDRRLFRVQ |
Parental | DIKYEPQLLADDDARLLQLETQGNQNCYNYLYRMKALDALRASEIPIHTKGRHPRSLMSRNFRSYLLDLR |
D.K.EPQLLA.DDARL.QLETQGNQNCYN.LY.MKALDA..A..IP.H..GRHPR.LM.RNF.SYLL... | |
Retrocopy | DSK*EPQLLAVDDARLPQLETQGNQNCYNCLYKMKALDAIHAFQIPFHSEGRHPRPLMGRNFHSYLLNFQ |
Parental | NATTPFKGVRKALIDTLLDGYETARYGTGVFSQSEYLRYQEALTELAT-AVKARSGSSQRHHQSAA-KDL |
NATTPFKGV.KAL.D.LL..YE.ARYGTG.F.QSE.LR.QEALTELAT...K...G.....HQSAA.KDL | |
Retrocopy | NATTPFKGVCKALVDSLLHSYEAARYGTGLFGQSENLRSQEALTELATVGQKHEKGALSDTHQSAA>KDL |
Parental | TQSP-EVSPTTIQVTYL-PSNQKSK-RAKHFL |
TQSP...SP.T.QVT.L.PS.QK....AKH.L | |
Retrocopy | TQSP<LKSPNTFQVT*L>PSSQKELIVAKHVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011865 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009722 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019160 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005454 | 1 retrocopy | |
Equus caballus | ENSECAG00000017585 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000001056 | 15 retrocopies | |
Macropus eugenii | ENSMEUG00000002600 | 6 retrocopies | |
Myotis lucifugus | ENSMLUG00000013338 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017237 | 3 retrocopies | |
Mus musculus | ENSMUSG00000027942 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000012008 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000007244 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000000785 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002717 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017758 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000012915 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000013866 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012777 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000015824 | 1 retrocopy |