RetrogeneDB ID: | retro_etel_661 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_135229:87..498(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB10 | ||
Ensembl ID: | ENSETEG00000010795 | ||
Aliases: | None | ||
Description: | RAB10, member RAS oncogene family [Source:HGNC Symbol;Acc:9759] |
Percent Identity: | 96.35 % |
Parental protein coverage: | 68.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DTAGQERFYTITTSYYRGAMGIMLVYDITNGKSFEKINKWLTNIDDHANEDVERMLLGNKCDMDDKRVVP |
DTAGQERF.TITTSYYRGAMGIMLVYDITNGKSFE.I.KWL.NID.HANEDVERMLLGNKCDMDDKRVVP | |
Retrocopy | DTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVP |
Parental | KGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENVDISSGGGGTGWRSKCC |
KGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENVDISSGGGGTGWRSKCC | |
Retrocopy | KGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSENVDISSGGGGTGWRSKCC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ciona intestinalis | ENSCING00000003959 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002205 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000010795 | 1 retrocopy |
retro_etel_661 ,
|
Myotis lucifugus | ENSMLUG00000009937 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000015821 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016698 | 1 retrocopy |