RetrogeneDB ID: | retro_etel_662 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_136328:325..768(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRDX5 | ||
Ensembl ID: | ENSETEG00000000264 | ||
Aliases: | None | ||
Description: | peroxiredoxin 5 [Source:HGNC Symbol;Acc:9355] |
Percent Identity: | 74.67 % |
Parental protein coverage: | 67.74 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VRAGRRPEGGGTRWTCDGVRGFHRAAAAMAPIKVGDALPAVVVFEGEPGTKVSLAELYKGKKGVLFG-VP |
.RAG..P.GGG.RW..D..R.FHRAAAA.A..KVG..LP.VVVF.GEPG.KVSL..L.KGKKGVLF..VP | |
Retrocopy | MRAGG-PPGGGDRWRFDSTRRFHRAAAARAQSKVGNVLPTVVVFGGEPGNKVSLVALHKGKKGVLFP>VP |
Parental | G-AFTPGCSKTHLPGFVEQAGALKAKGAQVVACLSVNDVFVTSEWGKAHQAEGKVRLLADPTGAFGKE-T |
G..FTPGCSKTHLPGFVEQAG.LK.KG.QVVA.L..NDVFVTSE.GKAHQAEGK.R.LADP.GAFGKE.T | |
Retrocopy | GGSFTPGCSKTHLPGFVEQAGTLKVKGTQVVAGLIINDVFVTSE*GKAHQAEGKLRFLADPIGAFGKE>T |
Parental | DLLLDDSLVP |
DLLLD.S.VP | |
Retrocopy | DLLLDGSWVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017959 | 1 retrocopy | |
Bos taurus | ENSBTAG00000008648 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018014 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000004647 | 1 retrocopy | |
Equus caballus | ENSECAG00000017747 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000000264 | 3 retrocopies |
retro_etel_1821, retro_etel_662 , retro_etel_740,
|
Felis catus | ENSFCAG00000028856 | 3 retrocopies | |
Homo sapiens | ENSG00000126432 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001337 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000025661 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000013397 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000012907 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005003 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000010811 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003106 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003835 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000013030 | 2 retrocopies |