RetrogeneDB ID: | retro_etel_680 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_142506:378..1136(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP2CB | ||
Ensembl ID: | ENSETEG00000018123 | ||
Aliases: | None | ||
Description: | protein phosphatase 2, catalytic subunit, beta isozyme [Source:HGNC Symbol;Acc:9300] |
Percent Identity: | 84.38 % |
Parental protein coverage: | 81.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | DVHGQFHDLM-ELFRIGG-KSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQIT |
.VH..F..L..ELFR.GG.KSPDT.YL....YVDRG...VET..LLVA.K.RYP.RITI.RGNH.SRQIT | |
Retrocopy | EVHDYFNILR<ELFRVGG<KSPDTTYLSVDAYVDRGNSTVETQSLLVASKLRYPARITISRGNHDSRQIT |
Parental | QVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALVDGQIF-CLHGGLSPSIDTLDHIRALDRLQEVPHEG |
QVYGF.DE.LRKYG...VWKYFTDLFDYLPLTALVDGQIF.CLHGGLSPS.D.LDHIRALDRLQEVP.EG | |
Retrocopy | QVYGFCDEALRKYGSVTVWKYFTDLFDYLPLTALVDGQIF>CLHGGLSPSRDPLDHIRALDRLQEVPREG |
Parental | PMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAP |
PMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETF.H.NGL.LVSRAHQLVM.GYNWCH.RNVVTIFSAP | |
Retrocopy | PMCDLLWSDPDDRGGWGISPRGAGYTFGQDISETFTHSNGLSLVSRAHQLVMDGYNWCHNRNVVTIFSAP |
Parental | NYCYRCGNQAAIMELDDTLKYSFLQFDPAPRRGEPHVTRRTPDYFL |
NYCYRCGNQAAIMELDDTLKYSFLQFDPAPR.GEP.VTRRTPDYFL | |
Retrocopy | NYCYRCGNQAAIMELDDTLKYSFLQFDPAPRSGEPRVTRRTPDYFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001615 | 1 retrocopy | |
Bos taurus | ENSBTAG00000009245 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010906 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007561 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000018123 | 4 retrocopies | |
Felis catus | ENSFCAG00000025139 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019001 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000002488 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000102 | 1 retrocopy |