RetrogeneDB ID: | retro_etel_685 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_144151:367..1200(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000007881 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.28 % |
Parental protein coverage: | 69. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 7 |
Parental | GGMGGGSML-FGVGGHFR-APSIHGGSG-GR-GVSVSSARFVSSSSSGGYGSGYGGVLSTSDGLLSGNEK |
G....GSML.FGVGGHF...PSIHGGSG.GR.GVSV.SARFVSSSSS..YGSGY.GVLS.SDGLLSGNEK | |
Retrocopy | GAWASGSML>FGVGGHFH>TPSIHGGSG>GR>GVSVLSARFVSSSSSWAYGSGYAGVLSMSDGLLSGNEK |
Parental | ITMQNLNDRLASYLDKVRALETANTDLEVKIRDWYQKQGPGPARDYSHYYKTIEDLRDQILGATIQNSKV |
ITMQNLNDRLASYLDKVRALE.ANTDLEVKI.D.YQKQGPGPARDYSHYY.TIEDLR.QILGATIQNSKV | |
Retrocopy | ITMQNLNDRLASYLDKVRALEEANTDLEVKIHDQYQKQGPGPARDYSHYYETIEDLRHQILGATIQNSKV |
Parental | VLQIDNARLAADDFRTKFETEQALR-VSVEADINGLRRVLDELTLA-RADLEMQIEGLKEELAFLKKNHE |
VLQIDNARLAADDF..KFE.EQAL..VSVEADINGLRRVL.ELT.A.RADLEMQ.EGLKEELAFLKKNHE | |
Retrocopy | VLQIDNARLAADDFCIKFEAEQALA<VSVEADINGLRRVLEELTMA>RADLEMQSEGLKEELAFLKKNHE |
Parental | EEI-SVLKAQVGGQVSVEVDSTPGIDLAKILNDMRSQYELMAEKNRKDAEAWFIKQTEELKLEVDVHTEK |
EEI.SVLKAQVGGQVSVE.DSTPGIDLAKILN.MRSQ.ELMAEKNRKDAEAWFI..TE.LKLEVDVHTEK | |
Retrocopy | EEI>SVLKAQVGGQVSVEGDSTPGIDLAKILNHMRSQDELMAEKNRKDAEAWFIRRTEKLKLEVDVHTEK |
Parental | LQV |
LQV | |
Retrocopy | LQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000029756 | 9 retrocopies | |
Equus caballus | ENSECAG00000014086 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000007881 | 6 retrocopies | |
Homo sapiens | ENSG00000171345 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000016901 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000016158 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000018653 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010787 | 3 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016132 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024306 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000007908 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000008416 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000009168 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014403 | 2 retrocopies |