RetrogeneDB ID: | retro_etel_702 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_148306:7..802(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP2CB | ||
Ensembl ID: | ENSETEG00000018123 | ||
Aliases: | None | ||
Description: | protein phosphatase 2, catalytic subunit, beta isozyme [Source:HGNC Symbol;Acc:9300] |
Percent Identity: | 96.23 % |
Parental protein coverage: | 85.76 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MDDKAFTKELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFR |
MDDKAFTKELDQWVEQLNECKQL.ENQVR.LCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFR | |
Retrocopy | MDDKAFTKELDQWVEQLNECKQLKENQVRMLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFR |
Parental | IGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHESRQITQVYGFYDECLRKYGNA |
IGGKSPDTNYLF.GDYVDRGYYSVETVTL.VA.KVRYPERITILRGNHESRQITQV.GFYDECLRKYGNA | |
Retrocopy | IGGKSPDTNYLFVGDYVDRGYYSVETVTLPVA*KVRYPERITILRGNHESRQITQVHGFYDECLRKYGNA |
Parental | NVWKYFTDLFDYLPLTALVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWG |
NVWKYFTDLFDYLPLT.LVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWG | |
Retrocopy | NVWKYFTDLFDYLPLTVLVDGQIFCLHGGLSPSIDTLDHIRALDRLQEVPHEGPMCDLLWSDPDDRGGWG |
Parental | ISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNY |
ISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNW.HDRNVVTIF..PNY | |
Retrocopy | ISPRGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWSHDRNVVTIFNTPNY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001615 | 1 retrocopy | |
Bos taurus | ENSBTAG00000009245 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000010906 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007561 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000018123 | 4 retrocopies | |
Felis catus | ENSFCAG00000025139 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000019001 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000002488 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000102 | 1 retrocopy |