RetrogeneDB ID: | retro_etel_723 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_155158:4871..5828(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KLHL12 | ||
Ensembl ID: | ENSETEG00000007800 | ||
Aliases: | None | ||
Description: | kelch-like family member 12 [Source:HGNC Symbol;Acc:19360] |
Percent Identity: | 79.44 % |
Parental protein coverage: | 64.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LSEKGKPYVDIQGLTASTMEILLDFVYTETVHVTVENVQELLPAACLLQLKGVKQACCEFLESQLDPSNC |
LSEKG.PYVD.QGLTASTMEILLDFVY.ETV.VTVENVQ..LPAACLLQ.KGVKQACCEFLES.LDPS.C | |
Retrocopy | LSEKGEPYVDNQGLTASTMEILLDFVYAETVRVTVENVQGVLPAACLLQPKGVKQACCEFLES*LDPSTC |
Parental | LGIRDFAETHNCVDLMQAAEVFSQKHFPEVVQHEEFILLSQGEVEKLIKCDEIQVDSEEPVFEAVINWVK |
LGIRDFAETH.C.DLMQAAEVF.Q.HFP.VV.HEEFILLSQGEVEK.IKCDE.QVDS.EPVFEAVINWVK | |
Retrocopy | LGIRDFAETHHCADLMQAAEVFIQQHFPDVVHHEEFILLSQGEVEKPIKCDETQVDSGEPVFEAVINWVK |
Parental | HAKKEREESLPDLLQYVRMPLLTPRYITDVIDAEPFIRCSLQCRDLVDEAKKFHLRPELRSQMQGPRTRA |
HAKKER.ESLPDLLQYVR.PLLTPRYITDVI.AEPFI.CSLQCRDLVDEAKKFHLRPEL.SQ.QGPRTRA | |
Retrocopy | HAKKERGESLPDLLQYVRRPLLTPRYITDVIEAEPFICCSLQCRDLVDEAKKFHLRPELQSQTQGPRTRA |
Parental | RLGANEVLLVVGGFGSQQSPIDVVEKYD-PKTQEWSFLPS-ITRKRRYVASVSLHDRIYVIGGYDGRSRL |
RLGA.E.LLVV.GF.SQQ.PIDVVEKYD.P......F......R......S......IYVIG.YDGRSRL | |
Retrocopy | RLGATEGLLVVRGFRSQQLPIDVVEKYD>PRLRSGAFCQAALMRDVMWPQSPCMTGWIYVIGAYDGRSRL |
Parental | SSVECLDYTADEDG-VWYSVAPMNVRRGLAGATTLGDMIYV |
.SV.C.DYTADED...WYSVAP.NVRRGLAGATTLG....V | |
Retrocopy | RSVGCVDYTADEDR<IWYSVAPVNVRRGLAGATTLGGRLDV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000006231 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010436 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007800 | 2 retrocopies |
retro_etel_2103, retro_etel_723 ,
|
Homo sapiens | ENSG00000117153 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017849 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000018103 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014771 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000343 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001861 | 1 retrocopy |