RetrogeneDB ID: | retro_etel_731 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_156347:5708..6109(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000018348 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SOD2 | ||
Ensembl ID: | ENSETEG00000016400 | ||
Aliases: | None | ||
Description: | superoxide dismutase 2, mitochondrial [Source:HGNC Symbol;Acc:11180] |
Percent Identity: | 68.89 % |
Parental protein coverage: | 62.15 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | FNGGGHINHTIFWTNLIPNGGGEPKGQLLEAIKRDFGSFDKFKEKL-TAVSV-GVQGSGWGWLGFNKERG |
F.GGGH.N.TIFWT...P.GGG...GQLLEAI..DF.SFDKF.EK...AVSV.GVQGSGWGWLG.N.E.G | |
Retrocopy | FHGGGHTNQTIFWTHRSPTGGGQHNGQLLEAIRHDFSSFDKFQEKF>SAVSV>GVQGSGWGWLGLNRELG |
Parental | HLQIAACANQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK |
HLQIAAC.....L.GT.GLIPLLG.DVW....YLQY...RPDYLKA.WNV..W.NV.ER.MACKK | |
Retrocopy | HLQIAACSPRTLLRGTAGLIPLLGMDVWGPVCYLQYQHARPDYLKAVWNVVQWKNVPERHMACKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |