RetrogeneDB ID: | retro_etel_733 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_156508:329..1335(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ESRRA | ||
Ensembl ID: | ENSETEG00000000262 | ||
Aliases: | None | ||
Description: | estrogen-related receptor alpha [Source:HGNC Symbol;Acc:3471] |
Percent Identity: | 77.75 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | VTSAMSSQVVGIEPLYIKAEPASPDSPKGSSETEPEPPVALA-PGP-APTRCLPGHKEEEDGEGAGPGEQ |
V.SAMSSQVVG.EPLYIKAEPAS..SPKGSSET..EP....A.P.P.A.....P....EE.GEGAGPGEQ | |
Retrocopy | VPSAMSSQVVGMEPLYIKAEPASSNSPKGSSET--EPEPPVA<PSPWASSHPMPPMPQEEGGEGAGPGEQ |
Parental | GGGKLVLSSLPKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQGSIEYSCPASNECEITKRRRKACQAC |
GGGKLVLSS.PKRLCLVCGDVASGYHY..ASCEACKAFFKR.IQGSIEYSCPASN.CEITKRR.KACQ.C | |
Retrocopy | GGGKLVLSSMPKRLCLVCGDVASGYHYDMASCEACKAFFKRIIQGSIEYSCPASNKCEITKRRCKACQPC |
Parental | RFTKCL-RVGMLKEGVRLDRVR-GGRQKYKRRPEVDPLPFSGPFPTGPLAVAGGP-RKTAPVNALVSHLL |
.FTKCL..VGMLKEGV.LD.V..GGR......P...P.P.S.P.........G.P.R.TAPVNALVSHLL | |
Retrocopy | CFTKCL<AVGMLKEGVHLDCVK<GGRE-VDSLPFSGPFPTS-PWQSRGFVGRGAP<RMTAPVNALVSHLL |
Parental | VVEPEKLYAMPDPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLG |
VVEPEKL.AMPD.AGPD.HLPAVATLCDLFDREIVVTISWAKSIPGF..LSLSDQMSV.QSVWMEVLVLG | |
Retrocopy | VVEPEKLCAMPDLAGPDEHLPAVATLCDLFDREIVVTISWAKSIPGFWLLSLSDQMSVIQSVWMEVLVLG |
Parental | VAQRSLPLQDELAFAEDLVLDEEGARAAG-LGELGAALLQLVRRLQALRLEREEYVLLKALALANS |
VA..SLPLQDELAF.ED.VLDEEG.RAAG.LGE.GAALLQLV.RLQALR.E.EEYVLLKALALANS | |
Retrocopy | VAHHSLPLQDELAFTEDVVLDEEGTRAAG<LGERGAALLQLVWRLQALRYEHEEYVLLKALALANS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000018030 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000000262 | 1 retrocopy |
retro_etel_733 ,
|
Homo sapiens | ENSG00000173153 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000001333 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017803 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004971 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000003107 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003833 | 1 retrocopy |