RetrogeneDB ID: | retro_etel_734 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_156666:1073..1628(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TFB1M | ||
Ensembl ID: | ENSETEG00000005709 | ||
Aliases: | None | ||
Description: | transcription factor B1, mitochondrial [Source:HGNC Symbol;Acc:17037] |
Percent Identity: | 91.89 % |
Parental protein coverage: | 52.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GLFVYGRTQMTLTFQKEVAERLTASTGSKQRSRLSIMAQYLCSVQHVLTIPGQAFIPKPEVDVGLVHFVP |
G.FVYGR.QMTLTFQKEVAERLTA.TGSKQRSRLSIMAQYLCSVQHVLTIPGQAFIPKPEVDVGLVHF.P | |
Retrocopy | GPFVYGRMQMTLTFQKEVAERLTATTGSKQRSRLSIMAQYLCSVQHVLTIPGQAFIPKPEVDVGLVHFIP |
Parental | LVWLTIQQLFDLVEKVVQHVFHFRRKYCYRGLGMLFPEDRRLESTGRLLQLADVEPTLRPCQLSLAHFRS |
LV...IQQ.FDLVEKVVQHVF.FRRKYCY.GLGMLFPED.RLESTGRLLQLADVEPTLRPCQLSLAHFRS | |
Retrocopy | LVRPAIQQPFDLVEKVVQHVFQFRRKYCYHGLGMLFPEDQRLESTGRLLQLADVEPTLRPCQLSLAHFRS |
Parental | LCDVYRGMCDGDPQLFAYNFREELKQNKSRSREAREP-GALRLSQ |
LCDVYRGMCDGDPQLFAYNFREELKQNKSRS..ARE..GALRLSQ | |
Retrocopy | LCDVYRGMCDGDPQLFAYNFREELKQNKSRSQKAREARGALRLSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000005709 | 1 retrocopy |
retro_etel_734 ,
|
Echinops telfairi | ENSETEG00000020059 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000001699 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000006327 | 1 retrocopy |