RetrogeneDB ID: | retro_etel_765 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_161388:1022..1584(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000001820 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FYTTD1 | ||
Ensembl ID: | ENSETEG00000000700 | ||
Aliases: | None | ||
Description: | forty-two-three domain containing 1 [Source:HGNC Symbol;Acc:25407] |
Percent Identity: | 63.68 % |
Parental protein coverage: | 58.99 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | RYFPVLKRKTDLLRQNEVQGKPVAVLKRPNQLNRKSNIPANFTRSGNK-LSHQKDTRQATFLFRRGLKVQ |
RYFPVLKR....LRQNEVQ.K..A.LKRPNQ.NRKS.I..NF.R......SHQKDT.Q..FLFRRGLKVQ | |
Retrocopy | RYFPVLKRRKNILRQNEVQRKALALLKRPNQPNRKSRILLNFPRIKKE<ISHQKDTCQDFFLFRRGLKVQ |
Parental | AQLNTEQLLDDVVAKRTRQWRTSTTNGGILTVSIDNPGAVHNPVTQKPRLTRTS-VPSFLAKREQSDVKK |
AQLN.EQLLDD.V.KRT....TSTTNGGILTVS...P.AVH...TQKP.L..T...P....K...SDVK. | |
Retrocopy | AQLNIEQLLDDIVVKRTHRGQTSTTNGGILTVSTAHPDAVHSRATQKP*LIYTY>LPPHSWKSRRSDVKE |
Parental | VPKGVPLQFDINSVGKQTGMTLNERFGILKE-QRATLTFNKGGSRFVTVG |
V.K.V.LQ.DINSVGKQTGMTL....GIL....RATL.FNKG.S.....G | |
Retrocopy | VSKRVSLQVDINSVGKQTGMTLKKEIGILRN>RRATLRFNKGESCLEAAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014874 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000029695 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000002881 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000016488 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000011463 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000007807 | 6 retrocopies | |
Erinaceus europaeus | ENSEEUG00000001433 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000700 | 1 retrocopy |
retro_etel_765 ,
|
Homo sapiens | ENSG00000122068 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000011665 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006626 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015547 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000014456 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000015796 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009996 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005704 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000005595 | 4 retrocopies |