RetrogeneDB ID: | retro_etel_779 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_163215:3659..4779(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SDAD1 | ||
Ensembl ID: | ENSETEG00000004811 | ||
Aliases: | None | ||
Description: | SDA1 domain containing 1 [Source:HGNC Symbol;Acc:25537] |
Percent Identity: | 89.87 % |
Parental protein coverage: | 59.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MFMAQIGHCYPEQLSSFPQELKDLLSYNHTVLDSDLRMTFCKALILLRNKNLINPSSLLELFFELLRCHD |
.F.AQ.GHCYPEQLSSFPQE.KDLLSY.HTVLD.DLRMT.CKALILLR.K.LINP.SLLELFF.LL.CHD | |
Retrocopy | VFVAQNGHCYPEQLSSFPQEWKDLLSYCHTVLDPDLRMTLCKALILLRSKHLINPLSLLELFFALLCCHD |
Parental | KLLRKTLYTHIVTDIKNINAKHKNNKVNVVLQNFMYTMLRDSSATAAKISLDVMIELYRRNIWNDAKTVN |
..L.KTLYTHIVTDIKNIN.KH..NKVNVVLQ.FM...LRD..A.AAKISLDV.IELYRRNIWNDA.TV. | |
Retrocopy | TRL*KTLYTHIVTDIKNINEKHESNKVNVVLQHFMDPVLRDRHAMAAKISLDVRIELYRRNIWNDAQTVS |
Parental | -VITTACFSPVTKILVAALTFFL-KDEQEKQDSDSDSE-EGPTARD-LVQYATGKKSSKHKKKLEKAMKV |
...TT.C.S.VTKILVAALTFFL.KDEQEKQDSDSDSE.E.PTARD.LVQYATGKKSSKHKKKLEKAMKV | |
Retrocopy | >TTTT-CLSLVTKILVAALTFFLGKDEQEKQDSDSDSEDEEPTARDLLVQYATGKKSSKHKKKLEKAMKV |
Parental | LKKQKKKKKPEVFNFSAIHLIHDPQDFAEKLLKQLESSKERFEVKMMLMNLISRLVGIHELFLFNFYPFV |
LKKQKKKKKPEVFNFSAIHLIHDPQDFAEKLLKQLESSKERFEVKMMLMNLISRLVGIHELFLFNFYPFV | |
Retrocopy | LKKQKKKKKPEVFNFSAIHLIHDPQDFAEKLLKQLESSKERFEVKMMLMNLISRLVGIHELFLFNFYPFV |
Parental | QRFLQPHQREVTKILLFAAQASHHLVPPEIIQSLLMTVANNFVTDKNSGEVMTVGINAIKEITARCPLAM |
QRFLQPHQREVTKILLFAAQASHHLVPPEIIQSLLMTVANNFVTDKNSGEVMTVGINAIKEITARCPLAM | |
Retrocopy | QRFLQPHQREVTKILLFAAQASHHLVPPEIIQSLLMTVANNFVTDKNSGEVMTVGINAIKEITARCPLAM |
Parental | TEELLQDLAQYKTHKDKNVMMSART |
TEELLQDLAQYKTHKDKNVMMSART | |
Retrocopy | TEELLQDLAQYKTHKDKNVMMSART |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000008521 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000004811 | 2 retrocopies |
retro_etel_1946, retro_etel_779 ,
|
Gorilla gorilla | ENSGGOG00000006441 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012217 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000006682 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017503 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027034 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000022229 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000008974 | 1 retrocopy |