RetrogeneDB ID: | retro_etel_796 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_165177:2837..3284(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5G2 | ||
Ensembl ID: | ENSETEG00000005968 | ||
Aliases: | None | ||
Description: | ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9) [Source:HGNC Symbol;Acc:842] |
Percent Identity: | 75.82 % |
Parental protein coverage: | 96.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SPATAPHPLKMYACAKFVSTPSLVRSTSQLLSRPLSVLVQKRPETLSDERFSSLTAPRSQTSLVPSRSFQ |
.P.T.PHPLKMYA..KFVST.SL.RSTSQLL..PL.VLVQ...ETL.DE.FSSLTAPRS.TSL.PS.SF. | |
Retrocopy | APDTTPHPLKMYAYVKFVSTLSLIRSTSQLLT*PLFVLVQIQLETLTDEHFSSLTAPRSLTSLIPSHSFL |
Parental | TSTVSRDIDTAAKFIGAGAATVGVAG-SGAGIGTVF-GSLIIGYARNPSLKQQLFSYAILGFALSEAMGL |
.ST.SRDIDTAAK.IGAGAATVGVAG.SGAGIG.V..GS...GY.RNPSLKQQLFSY.ILGFA.....GL | |
Retrocopy | ASTLSRDIDTAAKYIGAGAATVGVAG>SGAGIGSVL<GSVLLGYTRNPSLKQQLFSYIILGFAFLK--GL |
Parental | FCLMVAFLILFAM |
FCLMVAFLILFA. | |
Retrocopy | FCLMVAFLILFAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |