RetrogeneDB ID: | retro_etel_837 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_172987:3201..3842(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB11A | ||
Ensembl ID: | ENSETEG00000004920 | ||
Aliases: | None | ||
Description: | RAB11A, member RAS oncogene family [Source:HGNC Symbol;Acc:9760] |
Percent Identity: | 85.12 % |
Parental protein coverage: | 98.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTR-NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG |
MGTR..EY.YLFK.V.IG.SGVGKSNLLSRFTR.NEFNLESKSTIGVEFATRSIQVDGKT.K.Q.WDTAG | |
Retrocopy | MGTRKKEYNYLFKGVFIGVSGVGKSNLLSRFTR>NEFNLESKSTIGVEFATRSIQVDGKTMKTQVWDTAG |
Parental | QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEA |
QERYRAITSA...GAVGAL.VYDIA.HLTYEN.ERWLKELR.HADSNIV.MLVGNKSDLRHLRAVP.DEA | |
Retrocopy | QERYRAITSACCHGAVGAL*VYDIAEHLTYENAERWLKELRGHADSNIVNMLVGNKSDLRHLRAVPADEA |
Parental | RAFAEKNGLSFI-ETSALDSTNVEAAFQTILTEIHHTVSQKQVPNRHENDMSPRNTGVPIHVPPTTDNKP |
RA.AEKNGLSFI.ETSALDSTNVEAAFQTILTEI...VSQKQ...R.ENDMSP.N..VPIHVPPTTDNKP | |
Retrocopy | RALAEKNGLSFI>ETSALDSTNVEAAFQTILTEIYRIVSQKQLSDRRENDMSPSNNVVPIHVPPTTDNKP |
Parental | NVQCC |
.VQCC | |
Retrocopy | KVQCC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000018959 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000007333 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004920 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000010340 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000018042 | 3 retrocopies | |
Homo sapiens | ENSG00000103769 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014252 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000008820 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000008006 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012853 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000009335 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000006573 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007188 | 1 retrocopy |