RetrogeneDB ID: | retro_etel_844 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_174722:2744..3244(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PIGH | ||
Ensembl ID: | ENSETEG00000008623 | ||
Aliases: | None | ||
Description: | phosphatidylinositol glycan anchor biosynthesis, class H [Source:HGNC Symbol;Acc:8964] |
Percent Identity: | 60.67 % |
Parental protein coverage: | 94.15 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GGRLALQRRHYSPSCREFCLSCPRLSLRSLTAVTCSVWLAAYALFTLFENSVILSAAIFITLLGLLGYLH |
GG....Q..H....C...C.S.P......L.....S..L......TL.ENS..LS.AIF.TLLGLLGYLH | |
Retrocopy | GGGRQWQWGHLALQC---CYSSPPCQEFCLNCPQLSLRLLTRVTCTL-ENSMGLSSAIFQTLLGLLGYLH |
Parental | FVKIDQETLLIIDSLGIQLTSSYASGKESTTFIEMGKVKDIIINEAIYMQKVIYYLCILLKDPLEPHGIS |
.VKIDQETLLIIDSLG...TSSYASG...T.FIEMG.VKDI.INEAIY..KV.YYLCILLKDPLEPHGIS | |
Retrocopy | LVKIDQETLLIIDSLGTLMTSSYASG---TAFIEMG*VKDIFINEAIYIGKVTYYLCILLKDPLEPHGIS |
Parental | QVVPVFQNAKPRLDCLIEVYRSCQEILAHRKA-TSTSP |
QVV.VFQ.AKP.L..L..V...C......RK..TSTSP | |
Retrocopy | QVVTVFQSAKPWLAGLSRV---CSRSWHTRKS<TSTSP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000003328 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008623 | 1 retrocopy |
retro_etel_844 ,
|
Homo sapiens | ENSG00000100564 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000001507 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000011325 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004467 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000739 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005925 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006466 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008465 | 1 retrocopy |