RetrogeneDB ID: | retro_etel_861 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_177180:1547..1946(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BLOC1S2 | ||
Ensembl ID: | ENSETEG00000007299 | ||
Aliases: | None | ||
Description: | biogenesis of lysosomal organelles complex-1, subunit 2 [Source:HGNC Symbol;Acc:20984] |
Percent Identity: | 66.43 % |
Parental protein coverage: | 97.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | AAEGVPAGRSDEPGRDDAMVETAEEAKE-PAEADINELCRDMF-SKMATYLTGELTATSEDYKLLENMNK |
AAEGV.AG.S.EP.RD.AM..TAEEAKE..A.A...ELC.DMF.SK.AT.LTGELTA.S.DYKLLE...K | |
Retrocopy | AAEGVLAG*SEEPVRDHAMGHTAEEAKE<AAAAHLSELCKDMF<SKIATHLTGELTAISQDYKLLE---K |
Parental | LTSLKYLEMKDIAINISRNLTDL-NQKYAG-LQPYLDQINLIEEQVAALEQAAYKLDAYS-KKLEAKYKK |
...L..L....IAI.ISRNL.DL.N...AG.LQPYLDQINLIEE.VAALEQAA.KLDAY..KK.E....K | |
Retrocopy | MNKLTSLKYR-IAISISRNLKDL<NPECAG<LQPYLDQINLIEELVAALEQAADKLDAYL>KKVEVNSQK |
Parental | LEK |
L.K | |
Retrocopy | LGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |