RetrogeneDB ID: | retro_etel_864 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_177707:748..1188(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000018754 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CALM2 | ||
Ensembl ID: | ENSETEG00000018667 | ||
Aliases: | None | ||
Description: | calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445] |
Percent Identity: | 91.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ADQLTEEQIAEFK-EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
ADQLTEEQI..FK.E.FSLFDKDGDGT.TTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL | |
Retrocopy | ADQLTEEQIGVFK<EDFSLFDKDGDGTVTTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL |
Parental | TMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE |
TMM.RKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEK.TD.EVDEMIREADID.DGQV... | |
Retrocopy | TMMVRKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKRTDKEVDEMIREADIDSDGQV-I* |
Parental | EFVQMMTAK |
EFVQMMTAK | |
Retrocopy | EFVQMMTAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000015712 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008245 | 6 retrocopies | |
Cavia porcellus | ENSCPOG00000012181 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000000040 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000009377 | 5 retrocopies | |
Echinops telfairi | ENSETEG00000018667 | 16 retrocopies | |
Ficedula albicollis | ENSFALG00000012828 | 1 retrocopy | |
Gadus morhua | ENSGMOG00000009342 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000005059 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000009865 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000029016 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000017466 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009222 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008824 | 6 retrocopies | |
Petromyzon marinus | ENSPMAG00000003323 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012430 | 5 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000013173 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008433 | 1 retrocopy | |
Taeniopygia guttata | ENSTGUG00000002581 | 1 retrocopy |