RetrogeneDB ID: | retro_etel_872 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_178274:1314..2013(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000013742 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TSPAN3 | ||
Ensembl ID: | ENSETEG00000010916 | ||
Aliases: | None | ||
Description: | tetraspanin 3 [Source:HGNC Symbol;Acc:17752] |
Percent Identity: | 66.81 % |
Parental protein coverage: | 92.8 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | QCGITS-STVLAFLILIWGAAG-ILCYVGAYVFITYDDYDHFFEDVYTLIPAVVIIAVGALLFIIGLIGC |
QC..TS..TVL.FL.LI....G...C.....VFITY.DYDH.F.....LIPAV.I..VGALL.IIGL.G. | |
Retrocopy | QCVVTSFKTVLVFLNLIF*CRG<AFCTMWGPVFITYEDYDHNFGNMHILIPAVAITTVGALLSIIGLNGY |
Parental | CATIRESHCGLATFVAILLLVFVTEVVVVVLGYVYRAKVENEVDRSIQKVYKTYNGTNPDAASRAIDYVQ |
C..I.ESHCGLATF..ILLL.FVTEV..VVLGY.YRAKVENEV...IQK.YK.Y...NPD..S.AIDY.Q | |
Retrocopy | CTMIPESHCGLATFFIILLLDFVTEVGIVVLGYLYRAKVENEVNHGIQKFYKAYKEINPDTSSQAIDYEQ |
Parental | RQLRCCGIHNYSDWENTDWFKETKNQSVPLSCCRETAPSCNGSLAHPSDLYAEGCEALVVKKL-QEIMMH |
R.L.CCGIHNYS.WENTDWFKETKNQ..PLSC.RE.APSCN.SL.HPSD.YA..CEA.VVKKL..EIMM. | |
Retrocopy | RHLHCCGIHNYSNWENTDWFKETKNQNIPLSCYREQAPSCNSSLDHPSDRYA*ECEAIVVKKL>KEIMMN |
Parental | VIWAALAFAAIQLLGMLCACIVLCR |
VIW..L.F...Q.L.MLC.CIV.CR | |
Retrocopy | VIWVMLSFETLQQLDMLCTCIVPCR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009727 | 1 retrocopy | |
Bos taurus | ENSBTAG00000002415 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000018068 | 2 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000003785 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000005619 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000010916 | 1 retrocopy |
retro_etel_872 ,
|
Echinops telfairi | ENSETEG00000012276 | 1 retrocopy | |
Felis catus | ENSFCAG00000025746 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000017332 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000004662 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000005615 | 1 retrocopy |