RetrogeneDB ID: | retro_etel_878 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_178953:2360..2809(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000016407 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | OSTC | ||
Ensembl ID: | ENSETEG00000003717 | ||
Aliases: | None | ||
Description: | oligosaccharyltransferase complex subunit (non-catalytic) [Source:HGNC Symbol;Acc:24448] |
Percent Identity: | 63.58 % |
Parental protein coverage: | 97.99 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LYRVPFLVLECPNLKLKKPPW-VHMPSAM---TVYALVVVSYFLITGGIIYDVIVEPPSVGSMTDEHGHQ |
L.RVPFL.L.CPN..LKKP.W.VH.PS.....TV.ALVV.SY.LI.GGII..V.VEPP.VGS.TDEHG.Q | |
Retrocopy | LNRVPFLELKCPNWTLKKPLW<VHTPSGRYTRTVHALVVASYLLIPGGIIGAVTVEPPRVGSLTDEHGPQ |
Parental | RPVAFLAYRVNGQYIMEGLASSFLFTMGGLGFIILDRSNAPNIPKLNRFLLLFIGFVCVLLSFFMARV-F |
RP.AFL..RVNG.Y.M.GL.SS.LFT.....F.ILD..NAP..PKLNR.LLL.IGFVC.LL...M..... | |
Retrocopy | RPGAFLSHRVNGHYPMGGLESSVLFTRRRWAFRILDGPNAPDVPKLNRCLLLVIGFVCILLGLLMGVCEY |
Parental | MRMKLPGYLMG |
..MKLPG.LMG | |
Retrocopy | S*MKLPGGLMG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001753 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000011286 | 12 retrocopies | |
Callithrix jacchus | ENSCJAG00000016002 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000024467 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000003717 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000026873 | 6 retrocopies | |
Monodelphis domestica | ENSMODG00000020599 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008869 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041084 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011056 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000005915 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000023322 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009145 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000021644 | 6 retrocopies | |
Tarsius syrichta | ENSTSYG00000000724 | 2 retrocopies |