RetrogeneDB ID: | retro_etel_884 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_179961:3067..3611(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHA | ||
Ensembl ID: | ENSETEG00000007508 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase A [Source:HGNC Symbol;Acc:6535] |
Percent Identity: | 57.29 % |
Parental protein coverage: | 56.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | VSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVLGEHGDSSVPVWSGVN |
.S..V.ILT...WK.SG.PK..VI.SGCNLDSARFR.LM.E.LG.HP.SCHGW.LGE.GDSSV..WS.V. | |
Retrocopy | ISHTVNILT---WKQSGLPKHHVIESGCNLDSARFRSLMAENLGIHPSSCHGWILGEDGDSSVTIWSAVK |
Parental | VAGVSLKNLHPALGTDGDKEQWKEVHKQVVE-SAYEVIKLKGYTSWAIG-LSVADLAESIMK-NLRRVHP |
VAG.SL..L.P...TD.....W..VHK.VVE.S..EVIKL.GYT.WAIG...VAD..ESI.K.NL.R.HP | |
Retrocopy | VAGISLQELNPEMRTDNGRDNWEGVHKTVVE<SVFEVIKLNGYTNWAIG<IRVADHIESIFK<NLSRIHP |
Parental | ISTMIKGLY-GINEDVFLSV-PCILGQNGISDVVKVTLTTEEEARLKKSADT |
.STM.KG...GI...V......CIL...G...V....L.....A.LKKSADT | |
Retrocopy | GSTMVKGGV<GIEKEVSIIL<ECILNVRGLTSVFNQML-KDDVAQLKKSADT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |