RetrogeneDB ID: | retro_etel_886 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_179999:2603..3638(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000003779 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 96. % |
Parental protein coverage: | 60.55 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AMQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQGDPGSNPNKRQRQPPL |
..QSAQRAKASLN.ADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQ.DPGSNPNKRQRQPPL | |
Retrocopy | SVQSAQRAKASLNEADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQDDPGSNPNKRQRQPPL |
Parental | LGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRRMGPPVGGHRRGPSRYGPQYGHPPPPPPPPEYGPHA |
LGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGR.MGPPVGGHRR.PSRYGPQYGH....PPPP.YGPHA | |
Retrocopy | LGDHPAEYGGPHGGYHSHYHDEGYGPPPPHYEGRLMGPPVGGHRRDPSRYGPQYGH----PPPPQYGPHA |
Parental | DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKL |
DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVE.VKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKL | |
Retrocopy | DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVE-VKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKL |
Parental | NVCVSKQPAIMPGQSYGLEDGSCSYKDFNGSRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFE |
NVCVSKQPAIMPGQSYGLEDGSCSYKDFNGSRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFE | |
Retrocopy | NVCVSKQPAIMPGQSYGLEDGSCSYKDFNGSRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFE |
Parental | ICDELGVKRPSSVKVFSGKSERSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS |
ICDELGVKR.SSVKVFSGKSE.SSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS | |
Retrocopy | ICDELGVKRSSSVKVFSGKSESSSSGLLEWESKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000003779 | 1 retrocopy |
retro_etel_886 ,
|
Echinops telfairi | ENSETEG00000006890 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000014696 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009945 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010941 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016563 | 1 retrocopy |