RetrogeneDB ID:

retro_etel_9

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_24736:797..1697(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSETEG00000008639
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSETEG00000000510
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_etel_9
ATGGAAAAAAGATGGTGTGTCTCTCAACTCGAGCCCAAGTTGGCAGCAGGAAGTGGAACACACAGTCACGGGAACCAGTC
CACAGCTGTGCCCGCCTCTAGTTCAGGACCTCTTCAAAACCACCAGCATGTGGACAGCAACCATGAACTGGAGAATGTAG
CGGACTTAACTATGGGTCCTGGACATTCTCCTATTACACGAATGAATCCCACATCAGGAGCGCTGATCCCTCTCCCCCGT
CCCATTGGAACTGCCAACACCACCAAGAACCCGGTGGTGACAGCAGAGATGTGCTGCTACTGCTTTGATGTGCTCTACTG
TCACCTCTATGGCTGCCCACAGCCACGACTTCCTAGATTCACCAATGACCCCTATCCACTGTTTGTGACATGGAAGACAG
GGCGGGATAAGTGGCTCCGGGGCTGCATTGGAACCTTCTCAGCCATGAATCTTCACTCAGGACTCAGGAAATACTCGTTA
ACCAGTGCACTTAAGGACAGCCGATTTCCCCCAATGATGCCGGAGGAGCTACCTAAACTTTTCTGCTCTGTCTCCCTCTT
TACTGACTTTGAGGATGCCAGTGATTACCTGGACTGGGAGGTAGGGGTCCATGGCATTCGAATTGAATTCATCAATGAAA
AGGACATCACATGTACAGCCACATATTTACCTGAGGTTGCTAAAGAACAAGACTGGAGTCAGATCCAGACCATAGACTCA
TTGCTCAGGAAAGGTGGTTTAACGGCTCCTATTACCAGTGAATTCCGAAAAACGATCAAACTCACCAGGTACCGAAGTGA
GAAGGTGACACTCAGTTATGCAGAGTATATTGCTTCTCGCCAGCACTGCTTCCAGAATGGCACTCTTCATGCCCCACCCC
TCTACAATCATTACTCTTGA

ORF - retro_etel_9 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.41 %
Parental protein coverage: 94.52 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalCCGVKKPKLS-GSGTHSHGNQSATVPASSSGPLQNHQHVDSNNGRENVSDLTLGPGNSPITRMNPTSGAL
C.....PKL..GSGTHSHGNQS..VPASSSGPLQNHQHVDSN...ENV.DLT.GPG.SPITRMNPTSGAL
RetrocopyCVSQLEPKLAAGSGTHSHGNQSTAVPASSSGPLQNHQHVDSNHELENVADLTMGPGHSPITRMNPTSGAL
ParentalSPLPRPNGTANTTKNLVVTAEMCCYCFDVLYCHLYGFPQPRLPRFTNDXXPLFVTWKTGRDKRLRGCIGT
.PLPRP.GTANTTKN.VVTAEMCCYCFDVLYCHLYG.PQPRLPRFTND..PLFVTWKTGRDK.LRGCIGT
RetrocopyIPLPRPIGTANTTKNPVVTAEMCCYCFDVLYCHLYGCPQPRLPRFTNDPYPLFVTWKTGRDKWLRGCIGT
ParentalFSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFINEKG
FSAMNLHSGLR.Y.LTSALKDSRFPP...EELPKLFCSVSL.T.FEDASDYLDWEVGVHGIRIEFINEK.
RetrocopyFSAMNLHSGLRKYSLTSALKDSRFPPMMPEELPKLFCSVSLFTDFEDASDYLDWEVGVHGIRIEFINEKD
ParentalIKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKTIKLTRYRSENVSLSYAEYIASRQHCFQ
I..TATYLPEVAKEQDW.QIQTIDSLLRKGG..APITSEFRKTIKLTRYRSE.V.LSYAEYIASRQHCFQ
RetrocopyITCTATYLPEVAKEQDWSQIQTIDSLLRKGGLTAPITSEFRKTIKLTRYRSEKVTLSYAEYIASRQHCFQ
ParentalNGTLHAPPLYNHYS
NGTLHAPPLYNHYS
RetrocopyNGTLHAPPLYNHYS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_9 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 12 parental genes, and 13 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000093731 retrocopy
Callithrix jacchus ENSCJAG000000107431 retrocopy
Equus caballus ENSECAG000000230951 retrocopy
Echinops telfairi ENSETEG00000000510 1 retrocopy
retro_etel_9 ,
Homo sapiens ENSG000001442331 retrocopy
Gorilla gorilla ENSGGOG000000144481 retrocopy
Myotis lucifugus ENSMLUG000000068711 retrocopy
Macaca mulatta ENSMMUG000000019871 retrocopy
Mus musculus ENSMUSG000000419152 retrocopies
Nomascus leucogenys ENSNLEG000000157931 retrocopy
Pan troglodytes ENSPTRG000000124371 retrocopy
Sarcophilus harrisii ENSSHAG000000147621 retrocopy



Copyright © RetrogeneDB 2014-2017