RetrogeneDB ID: | retro_etel_9 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_24736:797..1697(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000008639 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000000510 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.41 % |
Parental protein coverage: | 94.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | CCGVKKPKLS-GSGTHSHGNQSATVPASSSGPLQNHQHVDSNNGRENVSDLTLGPGNSPITRMNPTSGAL |
C.....PKL..GSGTHSHGNQS..VPASSSGPLQNHQHVDSN...ENV.DLT.GPG.SPITRMNPTSGAL | |
Retrocopy | CVSQLEPKLAAGSGTHSHGNQSTAVPASSSGPLQNHQHVDSNHELENVADLTMGPGHSPITRMNPTSGAL |
Parental | SPLPRPNGTANTTKNLVVTAEMCCYCFDVLYCHLYGFPQPRLPRFTNDXXPLFVTWKTGRDKRLRGCIGT |
.PLPRP.GTANTTKN.VVTAEMCCYCFDVLYCHLYG.PQPRLPRFTND..PLFVTWKTGRDK.LRGCIGT | |
Retrocopy | IPLPRPIGTANTTKNPVVTAEMCCYCFDVLYCHLYGCPQPRLPRFTNDPYPLFVTWKTGRDKWLRGCIGT |
Parental | FSAMNLHSGLREYTLTSALKDSRFPPLTREELPKLFCSVSLLTNFEDASDYLDWEVGVHGIRIEFINEKG |
FSAMNLHSGLR.Y.LTSALKDSRFPP...EELPKLFCSVSL.T.FEDASDYLDWEVGVHGIRIEFINEK. | |
Retrocopy | FSAMNLHSGLRKYSLTSALKDSRFPPMMPEELPKLFCSVSLFTDFEDASDYLDWEVGVHGIRIEFINEKD |
Parental | IKRTATYLPEVAKEQDWDQIQTIDSLLRKGGFKAPITSEFRKTIKLTRYRSENVSLSYAEYIASRQHCFQ |
I..TATYLPEVAKEQDW.QIQTIDSLLRKGG..APITSEFRKTIKLTRYRSE.V.LSYAEYIASRQHCFQ | |
Retrocopy | ITCTATYLPEVAKEQDWSQIQTIDSLLRKGGLTAPITSEFRKTIKLTRYRSEKVTLSYAEYIASRQHCFQ |
Parental | NGTLHAPPLYNHYS |
NGTLHAPPLYNHYS | |
Retrocopy | NGTLHAPPLYNHYS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000009373 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000010743 | 1 retrocopy | |
Equus caballus | ENSECAG00000023095 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000000510 | 1 retrocopy |
retro_etel_9 ,
|
Homo sapiens | ENSG00000144233 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014448 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006871 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001987 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041915 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000015793 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012437 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014762 | 1 retrocopy |