RetrogeneDB ID: | retro_etel_901 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_182159:3756..4419(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ANXA5 | ||
Ensembl ID: | ENSETEG00000002187 | ||
Aliases: | None | ||
Description: | annexin A5 [Source:HGNC Symbol;Acc:543] |
Percent Identity: | 79.2 % |
Parental protein coverage: | 69.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | ALKGAGTDEKVLTEII-ASRTPAELRAIKQVYEEEYGSNLEDDVVADTSGYYQRMLVVLLQTNRDPDTGV |
AL.GAGTDEKVLT.I..ASRTPAELRAIKQV.EEE.GS.LE.....DTSG.YQ.ML.VLLQ..RDPDTG. | |
Retrocopy | ALRGAGTDEKVLTAIM>ASRTPAELRAIKQVHEEEHGSHLEAGL-GDTSGCYQSMLAVLLQARRDPDTGL |
Parental | DEAQ-VEHDAQVLFRAGELKWGTDEEKFITIFGTRSVSHLRRVFDKYMTISGFQIEETIDRETSGNLEQL |
.EAQ.VE.DAQVLF.AGELKWGTDEEKFITIFGTRSVSHLRRVFDKY.TISGF..EE.IDRE.SGN.EQL | |
Retrocopy | EEAQ<VEQDAQVLFQAGELKWGTDEEKFITIFGTRSVSHLRRVFDKYLTISGFPMEESIDRESSGNWEQL |
Parental | -LLAVVKSIRSIPGYLAETLYRALKGAGTDDH-TLIRVVVSRSEIDLFNIRKEFRKNFASSLYSMIKGDT |
.LLAVVKSIR..P..LA.TL..A..GA.TDD..TLIRVVVSRSEI.LFNIR.EFRKNFA.SLYSMIKG.T | |
Retrocopy | <LLAVVKSIRRTPAHLADTLDHAMQGAETDDR>TLIRVVVSRSEIHLFNIRMEFRKNFATSLYSMIKGET |
Parental | SGDYKKALLMLCGGED |
SGDYKKALL.LCGG.D | |
Retrocopy | SGDYKKALLVLCGGDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021746 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002187 | 3 retrocopies |
retro_etel_1728, retro_etel_370, retro_etel_901 ,
|
Echinops telfairi | ENSETEG00000018299 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000003853 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000003878 | 1 retrocopy |