RetrogeneDB ID: | retro_etel_913 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_183960:6766..7719(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000011500 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZNF512 | ||
Ensembl ID: | ENSETEG00000015916 | ||
Aliases: | None | ||
Description: | zinc finger protein 512 [Source:HGNC Symbol;Acc:29380] |
Percent Identity: | 84.1 % |
Parental protein coverage: | 58.14 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TPGRTSFKPQKSPRKSVGTKNSKNQCSIKDNSFQYTIPHDDSLSASSSASSCEAINDFPTSFRKSATY-K |
T.GRTSFK.QK.PRKS.GTKNSKNQCSIKDNSFQYTIPHDDS.S.SSSASSCEAINDFPTSF.KSATY.K | |
Retrocopy | TRGRTSFKQQKNPRKSIGTKNSKNQCSIKDNSFQYTIPHDDSFSGSSSASSCEAINDFPTSF*KSATYLK |
Parental | KIRRIKPPAASRVEGSGGASTKGKKKPRQEEDEDEDYRQFPQKKHNLYGRKQRPKPQPSPKPQPRRVRKE |
KI...KPPAAS...G......K........ED....YRQFPQKKHNL.GRKQRPKPQPSPKPQP.RV.KE | |
Retrocopy | KIKSTKPPAASSTKG----KRKPRQEEDEDED----YRQFPQKKHNL*GRKQRPKPQPSPKPQPHRVWKE |
Parental | PPTYAAGIVEEQWYLEIMDKGSVSCPTCQSVGRKTIEGLKKH-MENCRQELFTCHHCGKQLRSMAGMKYH |
.PTYA.G.VEEQWYLEIMDKGSVSC.TCQSVGRKTIEGLKK..MENCRQEL.TCHHCGKQL.SM.GMKYH | |
Retrocopy | LPTYAVGSVEEQWYLEIMDKGSVSCNTCQSVGRKTIEGLKKR<MENCRQELLTCHHCGKQLCSMTGMKYH |
Parental | VMANHNSLPILKAGGELDEPSERERLRTVLKRLGKIRCMRESCSSSFTSIMGYMYHVRKCGKAASELEKM |
VMANHNSLPILKAGGELDEPSERERLRTVLKRLGKIRCM.ESCSSSF.SIMGYMYH.RKC.KAAS.LEKM | |
Retrocopy | VMANHNSLPILKAGGELDEPSERERLRTVLKRLGKIRCMCESCSSSFISIMGYMYHFRKCSKAASQLEKM |
Parental | TLKCQHCAKPYRSKAGLAYHLRSEHGPISFLESGQSECLKDVNLESK |
TLKCQHCAKPYRSKAGLAYHLRSEHGPISFLESGQS.CLKDVNL.S. | |
Retrocopy | TLKCQHCAKPYRSKAGLAYHLRSEHGPISFLESGQSKCLKDVNLVSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003902 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000015916 | 1 retrocopy |
retro_etel_913 ,
|
Sorex araneus | ENSSARG00000002246 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000014564 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006511 | 1 retrocopy |