RetrogeneDB ID: | retro_etel_918 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_184785:3196..3922(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DPPA2 | ||
Ensembl ID: | ENSETEG00000007985 | ||
Aliases: | None | ||
Description: | developmental pluripotency associated 2 [Source:HGNC Symbol;Acc:19197] |
Percent Identity: | 66.13 % |
Parental protein coverage: | 86.79 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | GEQPSEQSVLVPPEVKPKKPRKRNKVHLPQTSEQAKVRRRNNTNIDLPLPDVLPPVTEVHRDTLRK-WCQ |
G....EQ.V.VPPEVK.K.PR.RNKVHLP...EQAK..R....N.D.PLP..LPP..EVHRDT..K.WCQ | |
Retrocopy | GSS*REQRVFVPPEVKLKTPRTRNKVHLPKAREQAKAHRKTSPNTDCPLPTILPPGNEVHRDTWQK>WCQ |
Parental | QAKLSTDGQKVEVYLRLQKFVYPHQ-KQDVPDSPRAAKIQSISRKRKIKQPTLEDKDRPS-RAQVANVVE |
....ST.GQKVE..L.LQ...YP.Q.KQD.PD.P..AK.QS.SRK.KIKQP.L.DK........V.NV.E | |
Retrocopy | NVNFSTNGQKVEACLWLQQCGYPDQ<KQDIPDTPQEAKSQSRSRKLKIKQPKLADKETGAPETEVTNVAE |
Parental | VDSPAPEATLASWARISSKALQPKAVNSRHLHSAIEAF-LAPGFGSRWCVVHGKTLPAETEGWVRLQFHA |
V.SP..E..LASW.RISSKALQPKAVNS.HLHSA.EAF.L.PGFGSRWCVVHGKTLP.ETE....LQF.A | |
Retrocopy | VASP--EDMLASWTRISSKALQPKAVNSCHLHSAVEAF>LSPGFGSRWCVVHGKTLPVETEVCACLQFYA |
Parental | GQTWVPSTPRRMISLFLLPAYV-FPPLDVEDNMLCPEC |
.QTWV.STP.RMISL.LLPAY..FPPLD.E.NMLCP.C | |
Retrocopy | CQTWVLSTPERMISLSLLPAYI<FPPLDLENNMLCPQC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |