RetrogeneDB ID: | retro_etel_93 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_157:101560..101826(+) | ||
Located in intron of: | ENSETEG00000006044 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TBCA | ||
Ensembl ID: | ENSETEG00000016572 | ||
Aliases: | None | ||
Description: | tubulin folding cofactor A [Source:HGNC Symbol;Acc:11579] |
Percent Identity: | 61.54 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LVKEKVMYEKEAKQQEE-KIEKMKAEDSENYAIKKQXXXXXXXXMMIPDCQRRFEAAYADLLQLLESEKD |
LVKE.VM..KEAK.Q.E....KMK.ED.E..AI.KQ..........IPD.Q...EA.Y.DLLQLLESEKD | |
Retrocopy | LVKEEVM*QKEAK-QQE<RLKKMKTEDGEKDAINKQVKILQGSQVIIPDWQHQWEAEYTDLLQLLESEKD |
Parental | LEEAEEFKEARLVLDSVKLEA |
LEEA..FKEA.LVLDSVK.E. | |
Retrocopy | LEEAKDFKEAHLVLDSVKSES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014223 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000019848 | 4 retrocopies | |
Cavia porcellus | ENSCPOG00000012187 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000016572 | 1 retrocopy |
retro_etel_93 ,
|
Homo sapiens | ENSG00000171530 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000011853 | 1 retrocopy | |
Mus musculus | ENSMUSG00000042043 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000010198 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000002460 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000015579 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000017013 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000048342 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009943 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000009840 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000006034 | 6 retrocopies | |
Tarsius syrichta | ENSTSYG00000000514 | 1 retrocopy |