RetrogeneDB ID: | retro_etel_946 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_189326:1648..2085(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000006403 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.67 % |
Parental protein coverage: | 72.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LISEGKWVKLEKTTYMDPTGKTRTWETVKRTTRKGQAA-DGVAIIPVLQRTLHYECVVLVKQF-PPMGGY |
LISEGKWVKLEKTTYMDPTGKTRTWETVK.T...GQ.A...VAIIPVL.RTLHYECV.LVKQF.PPMGG. | |
Retrocopy | LISEGKWVKLEKTTYMDPTGKTRTWETVKWTRGRGQYA<NSVAIIPVLRRTLHYECVILVKQF*PPMGGV |
Parental | CIEFPAGLIDDNESPEAAALRELEEETGYKGDFAECSPAVCLDPGLSNCTVHIVTVTIN--GDDAENVRP |
CIEFPA.LIDDNESPEAAALREL.E.TGYKGDFAEC.P.VCLD.GLSNC.VHIVTVTI...GDDA.NVRP | |
Retrocopy | CIEFPAALIDDNESPEAAALRELQEDTGYKGDFAECFPVVCLDLGLSNCIVHIVTVTITIIGDDADNVRP |
Parental | KPKPGDG |
K.KPGDG | |
Retrocopy | KAKPGDG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019509 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000004794 | 2 retrocopies | |
Equus caballus | ENSECAG00000023658 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006403 | 1 retrocopy |
retro_etel_946 ,
|
Felis catus | ENSFCAG00000025093 | 1 retrocopy | |
Homo sapiens | ENSG00000165609 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006325 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000012052 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000010453 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000017141 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012298 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000009308 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005816 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000002091 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000002294 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000017741 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011113 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007394 | 2 retrocopies |