>retro_etel_954
GCAGCTGATGTTTCTAGACATGGATATAGTTCCATATCAAGTTATAAGTGTACTCTCTAAAAGGGAAGTGCACTATGTTC
CTGGAAATGATGAGAAGAAAATAAAGACATTTCCATCTCTGAATTTAGCGCTCGATTGTGAGGATCACGTAACGAATGGC
TGTGAACAAAAGAGTGAAGTTTGAATGAGAATAGTTAAAGCTCTTAAAGACCTTGATCTTGGCCCAACAGAAAAGTGTGT
GAGAATTGACTCAGAGTCCAGTGCTCTTGCTGAAGAAGACCTGGAGGCTCATTTGCAATTCCAGGTTCTTCCTTCCAGCT
TGATGAGACCCAAGGTGGAAAATCCTGAGGAAATCCAATGGTTTTCAGACAAATTTTCATTTAATTTAAAGGGCCCAAAC
TTGAACAACCTAGGAATGTAATCCTCTTTTGTGGAAACTGCAGTGGGTTTTCTCAATTTTATAGACATGTGGAAAGAAGC
ACTGCAGACAGGTCAGCAAGTGGGTTTTTTTCTAGAC
ORF - retro_etel_954 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
62.92 % |
Parental protein coverage: |
54.4 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | AAAGCRRGRGSSSSHKYT-PRRAVLYVPGNDEKKIRKIPTLSVDCAVLDCEDGVA--ASKKSEARMRIVK |
| AA...R.G..S.SS.K.T...R.V.YVPGNDEKKI...P.L......LDCED.V......KSE..MRIVK |
Retrocopy | AADVSRHGYSSISSYKCT>SKREVHYVPGNDEKKIKTFPSLNL---ALDCEDHVTNGCEQKSEV*MRIVK |
|
Parental | TLEDFDLGPTEKCVRINAVSSGLAEEDLEALLQSRILPSSLMLPKVEHPEDIQWFSDKFSFHL-KGRKLE |
| .L.D.DLGPTEKCVRI...SS.LAEEDLEA.LQ...LPSSLM.PKVE.PE.IQWFSDKFSF.L.KG.KLE |
Retrocopy | ALKDLDLGPTEKCVRIDSESSALAEEDLEAHLQFQVLPSSLMRPKVENPEEIQWFSDKFSFNL<KGPKLE |
|
Parental | QPMNLI-PFVETAMGLLNFKAVCEEALRTGPHVGLTLD |
| QP.N.I..FVETA.G.LNF.....EAL.TG..VG..LD |
Retrocopy | QPRNVI>SFVETAVGFLNFIDMWKEALQTGQQVGFFLD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_954 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.