RetrogeneDB ID: | retro_etel_966 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_192661:917..1576(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000016338 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | USP14 | ||
Ensembl ID: | ENSETEG00000004949 | ||
Aliases: | None | ||
Description: | ubiquitin specific peptidase 14 (tRNA-guanine transglycosylase) [Source:HGNC Symbol;Acc:12612] |
Percent Identity: | 92.86 % |
Parental protein coverage: | 50.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | MKCTESDEEEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEIT-KQSPTLQRDALYTKSSKISRLPAY |
MKCTESDE.EVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEIT..QSPTLQRDALY.KSSKISRLPAY | |
Retrocopy | MKCTESDEQEVTKGKENQLQLSCFINQEVKYLFTGLKLRLQEEIT<QQSPTLQRDALYIKSSKISRLPAY |
Parental | LTIQMVR-FFYKEKESVNAKVLKDVKFPLMLDVYELCTPELQEKMVSFRSKFKDLEDKKVNQQPKISDQK |
LTIQMVR....KEKESVNAKVLKDVKFPLMLDVYELCTPELQEKMVSFRSKFKDLEDK.VNQQPKISDQK | |
Retrocopy | LTIQMVR>XXXKEKESVNAKVLKDVKFPLMLDVYELCTPELQEKMVSFRSKFKDLEDKTVNQQPKISDQK |
Parental | SSPQKETKYEPFSFVDDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPED |
SSPQKE.KYEPFSFVDDIGSNNCGYYDLQAVLT.QGRSSSSGHYVSWVKRK.DE..KFDDDKVSIVTPED | |
Retrocopy | SSPQKEAKYEPFSFVDDIGSNNCGYYDLQAVLTLQGRSSSSGHYVSWVKRKKDE-LKFDDDKVSIVTPED |
Parental | ILRLSG-GGDWHIA |
ILRLSG..GDWHIA | |
Retrocopy | ILRLSG<CGDWHIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000008213 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000010588 | 4 retrocopies | |
Echinops telfairi | ENSETEG00000004949 | 1 retrocopy |
retro_etel_966 ,
|