RetrogeneDB ID: | retro_etel_977 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_194819:8875..9769(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000006073 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000015680 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.93 % |
Parental protein coverage: | 77.81 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | EDTFLFTLEAVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVIINTGLVILAGKITSRAAVDYQKVV |
E.TFLFT.E.VGEGHPD.ICDQISDAVL.AHLQ.DPDAKVACETVIINTGLVILAGKITSRAA.DYQKVV | |
Retrocopy | EGTFLFTSESVGEGHPDEICDQISDAVLYAHLQ*DPDAKVACETVIINTGLVILAGKITSRAAIDYQKVV |
Parental | RDTIKHIGYDDSSKGFDYKTCALQVALEQQSPDIAQGGHLDLDQKEVGAGDYQGMVFGYAIDESEECMPL |
RDTIKHIGYDDSSKGFDYK.CA.QVALEQQSPDIAQGGHLDL..KEVGAGDYQGMVFGYA.DE.EECMPL | |
Retrocopy | RDTIKHIGYDDSSKGFDYKACAVQVALEQQSPDIAQGGHLDLNEKEVGAGDYQGMVFGYAADETEECMPL |
Parental | TLALAHQLNAKLAELRRNGTLPWLRPDSKTQVTMQYKKDQGAVLPIRVHEIVISVQHDEDVSLHEMREAL |
TL.LAHQLNAKLAELRRNGTLPWLRPDSKTQV..QY.KD.GAVLPIR.HEIV.SVQHDEDVSL.EMREAL | |
Retrocopy | TLVLAHQLNAKLAELRRNGTLPWLRPDSKTQVAVQYMKDRGAVLPIRIHEIVMSVQHDEDVSLDEMREAL |
Parental | KEKVIEVVVPTVFLDENIIYHLQPSGRFVTGGPQASTGMSGRKIIEDTYGGWGAHGGGAFSGKDCTKVDR |
KEKVI.VVVP...LDE..IYH.QPSGRFV.GGPQASTG.SG.KII.DTYGGWGAHGGGAFSGKDCTKVDR | |
Retrocopy | KEKVIKVVVPAKYLDEDTIYHIQPSGRFVIGGPQASTGLSGQKIILDTYGGWGAHGGGAFSGKDCTKVDR |
Parental | SAAYAARWVAKSLIDRDL |
SAAYAARWVAKSLI.RDL | |
Retrocopy | SAAYAARWVAKSLIERDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000013959 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007634 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000015680 | 4 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000003060 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000026925 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000013520 | 2 retrocopies |